Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF847 and GFF848 are separated by 15 nucleotides GFF848 and GFF849 are separated by 9 nucleotides GFF849 and GFF850 are separated by 13 nucleotides
GFF847 - Ascorbate-specific PTS system, EIIC component, at 28,582 to 29,979
GFF847
GFF848 - Ascorbate-specific PTS system, EIIB component (EC 2.7.1.69), at 29,995 to 30,300
GFF848
GFF849 - Ascorbate-specific PTS system, EIIA component (EC 2.7.1.-), at 30,310 to 30,774
GFF849
GFF850 - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD (EC 4.1.1.85) (L-ascorbate utilization protein D), at 30,788 to 31,438
GFF850
Position (kb) 29
30
31 Strain fitness (log2 ratio) -1
0
1
2 at 29.026 kb on + strand, within GFF847 at 29.026 kb on + strand, within GFF847 at 29.058 kb on + strand, within GFF847 at 29.098 kb on - strand, within GFF847 at 29.113 kb on + strand, within GFF847 at 29.113 kb on + strand, within GFF847 at 29.114 kb on - strand, within GFF847 at 29.114 kb on - strand, within GFF847 at 29.191 kb on + strand, within GFF847 at 29.192 kb on - strand, within GFF847 at 29.194 kb on - strand, within GFF847 at 29.297 kb on + strand, within GFF847 at 29.308 kb on + strand, within GFF847 at 29.386 kb on - strand, within GFF847 at 29.445 kb on + strand, within GFF847 at 29.446 kb on - strand, within GFF847 at 29.446 kb on - strand, within GFF847 at 29.446 kb on - strand, within GFF847 at 29.533 kb on - strand, within GFF847 at 29.572 kb on - strand, within GFF847 at 29.641 kb on - strand, within GFF847 at 29.641 kb on - strand, within GFF847 at 29.907 kb on + strand at 29.908 kb on - strand at 29.908 kb on - strand at 29.908 kb on - strand at 30.002 kb on + strand at 30.002 kb on + strand at 30.006 kb on + strand at 30.006 kb on + strand at 30.007 kb on - strand at 30.007 kb on - strand at 30.172 kb on - strand, within GFF848 at 30.205 kb on + strand, within GFF848 at 30.298 kb on + strand at 30.369 kb on + strand, within GFF849 at 30.772 kb on + strand at 31.009 kb on + strand, within GFF850 at 31.010 kb on - strand, within GFF850 at 31.191 kb on - strand, within GFF850
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 29,026 + GFF847 0.32 +0.1 29,026 + GFF847 0.32 -0.3 29,058 + GFF847 0.34 +0.1 29,098 - GFF847 0.37 +0.4 29,113 + GFF847 0.38 +0.6 29,113 + GFF847 0.38 -0.1 29,114 - GFF847 0.38 -0.4 29,114 - GFF847 0.38 +0.6 29,191 + GFF847 0.44 -0.4 29,192 - GFF847 0.44 +0.0 29,194 - GFF847 0.44 -0.4 29,297 + GFF847 0.51 -0.1 29,308 + GFF847 0.52 +0.1 29,386 - GFF847 0.58 -1.0 29,445 + GFF847 0.62 +1.8 29,446 - GFF847 0.62 +0.1 29,446 - GFF847 0.62 -1.3 29,446 - GFF847 0.62 +0.1 29,533 - GFF847 0.68 +0.8 29,572 - GFF847 0.71 +0.3 29,641 - GFF847 0.76 +0.1 29,641 - GFF847 0.76 -0.6 29,907 + +0.7 29,908 - -0.2 29,908 - +0.1 29,908 - -1.2 30,002 + +0.4 30,002 + +0.2 30,006 + +0.4 30,006 + -0.1 30,007 - -0.6 30,007 - -1.3 30,172 - GFF848 0.58 -0.7 30,205 + GFF848 0.69 -0.0 30,298 + +0.2 30,369 + GFF849 0.13 +0.7 30,772 + +0.3 31,009 + GFF850 0.34 +0.5 31,010 - GFF850 0.34 +0.5 31,191 - GFF850 0.62 +0.2
Or see this region's nucleotide sequence