Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF844 and GFF845 overlap by 4 nucleotides GFF845 and GFF846 are separated by 104 nucleotides GFF846 and GFF847 are separated by 362 nucleotides
GFF844 - YjfP protein, at 25,549 to 26,298
GFF844
GFF845 - Ascorbate utilization transcriptional regulator UlaR, HTH-type, at 26,295 to 27,050
GFF845
GFF846 - Probable L-ascorbate-6-phosphate lactonase UlaG (EC 3.1.1.-) (L-ascorbate utilization protein G), at 27,155 to 28,219
GFF846
GFF847 - Ascorbate-specific PTS system, EIIC component, at 28,582 to 29,979
GFF847
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1 at 26.247 kb on + strand at 26.308 kb on - strand at 26.432 kb on + strand, within GFF845 at 26.563 kb on + strand, within GFF845 at 26.613 kb on - strand, within GFF845 at 26.613 kb on - strand, within GFF845 at 26.633 kb on + strand, within GFF845 at 26.634 kb on - strand, within GFF845 at 26.665 kb on + strand, within GFF845 at 26.754 kb on - strand, within GFF845 at 27.401 kb on - strand, within GFF846 at 27.401 kb on - strand, within GFF846 at 27.423 kb on - strand, within GFF846 at 27.525 kb on + strand, within GFF846 at 27.526 kb on - strand, within GFF846 at 27.534 kb on + strand, within GFF846 at 27.555 kb on + strand, within GFF846 at 27.585 kb on + strand, within GFF846 at 27.589 kb on + strand, within GFF846 at 27.600 kb on - strand, within GFF846 at 27.600 kb on - strand, within GFF846 at 27.827 kb on + strand, within GFF846 at 27.828 kb on - strand, within GFF846 at 28.046 kb on + strand, within GFF846 at 28.046 kb on + strand, within GFF846 at 28.046 kb on + strand, within GFF846 at 28.047 kb on - strand, within GFF846 at 28.102 kb on + strand, within GFF846 at 28.595 kb on - strand at 28.673 kb on - strand at 28.674 kb on + strand at 28.746 kb on - strand, within GFF847 at 28.811 kb on - strand, within GFF847 at 28.811 kb on - strand, within GFF847 at 28.840 kb on + strand, within GFF847 at 28.840 kb on + strand, within GFF847 at 28.841 kb on - strand, within GFF847 at 28.884 kb on + strand, within GFF847 at 28.884 kb on + strand, within GFF847 at 28.885 kb on - strand, within GFF847 at 28.926 kb on + strand, within GFF847 at 28.927 kb on - strand, within GFF847 at 29.026 kb on + strand, within GFF847 at 29.026 kb on + strand, within GFF847 at 29.058 kb on + strand, within GFF847 at 29.098 kb on - strand, within GFF847 at 29.113 kb on + strand, within GFF847 at 29.113 kb on + strand, within GFF847 at 29.114 kb on - strand, within GFF847 at 29.114 kb on - strand, within GFF847 at 29.191 kb on + strand, within GFF847 at 29.192 kb on - strand, within GFF847 at 29.194 kb on - strand, within GFF847
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 26,247 + -0.6 26,308 - +1.2 26,432 + GFF845 0.18 +0.1 26,563 + GFF845 0.35 -1.4 26,613 - GFF845 0.42 +0.0 26,613 - GFF845 0.42 -0.4 26,633 + GFF845 0.45 -0.0 26,634 - GFF845 0.45 +0.0 26,665 + GFF845 0.49 -0.8 26,754 - GFF845 0.61 +0.2 27,401 - GFF846 0.23 +0.3 27,401 - GFF846 0.23 +0.0 27,423 - GFF846 0.25 +0.4 27,525 + GFF846 0.35 -0.1 27,526 - GFF846 0.35 +0.1 27,534 + GFF846 0.36 +1.0 27,555 + GFF846 0.38 +0.3 27,585 + GFF846 0.40 +0.1 27,589 + GFF846 0.41 -0.0 27,600 - GFF846 0.42 +0.0 27,600 - GFF846 0.42 -0.0 27,827 + GFF846 0.63 +0.8 27,828 - GFF846 0.63 +0.1 28,046 + GFF846 0.84 +0.9 28,046 + GFF846 0.84 +0.1 28,046 + GFF846 0.84 +0.3 28,047 - GFF846 0.84 -0.3 28,102 + GFF846 0.89 +0.8 28,595 - -0.2 28,673 - -0.4 28,674 + -2.3 28,746 - GFF847 0.12 +0.5 28,811 - GFF847 0.16 +0.9 28,811 - GFF847 0.16 -0.2 28,840 + GFF847 0.18 -0.5 28,840 + GFF847 0.18 +0.3 28,841 - GFF847 0.19 -0.1 28,884 + GFF847 0.22 -0.2 28,884 + GFF847 0.22 +0.5 28,885 - GFF847 0.22 +0.1 28,926 + GFF847 0.25 +0.0 28,927 - GFF847 0.25 -0.3 29,026 + GFF847 0.32 +0.1 29,026 + GFF847 0.32 -0.3 29,058 + GFF847 0.34 +0.1 29,098 - GFF847 0.37 +0.4 29,113 + GFF847 0.38 +0.6 29,113 + GFF847 0.38 -0.1 29,114 - GFF847 0.38 -0.4 29,114 - GFF847 0.38 +0.6 29,191 + GFF847 0.44 -0.4 29,192 - GFF847 0.44 +0.0 29,194 - GFF847 0.44 -0.4
Or see this region's nucleotide sequence