Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF79 and GFF80 overlap by 1 nucleotides GFF80 and GFF81 are separated by 48 nucleotides GFF81 and GFF82 are separated by 91 nucleotides GFF82 and GFF83 are separated by 138 nucleotides
GFF79 - Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD, at 61,426 to 62,316
GFF79
GFF80 - Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC, at 62,316 to 63,113
GFF80
GFF81 - Ferric hydroxamate outer membrane receptor FhuA, at 63,162 to 65,273
GFF81
GFF82 - hypothetical protein, at 65,365 to 65,505
GFF82
GFF83 - Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-), at 65,644 to 68,166
GFF83
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -1
0
1 at 62.281 kb on + strand at 62.295 kb on + strand at 62.304 kb on - strand at 62.317 kb on + strand at 62.318 kb on - strand at 62.318 kb on - strand at 62.320 kb on + strand at 62.320 kb on + strand at 62.381 kb on - strand at 62.464 kb on + strand, within GFF80 at 62.704 kb on - strand, within GFF80 at 62.730 kb on + strand, within GFF80 at 62.848 kb on + strand, within GFF80 at 62.966 kb on + strand, within GFF80 at 62.987 kb on + strand, within GFF80 at 62.988 kb on - strand, within GFF80 at 63.087 kb on - strand at 63.220 kb on + strand at 63.263 kb on + strand at 63.316 kb on + strand at 63.316 kb on + strand at 63.351 kb on + strand at 63.448 kb on + strand, within GFF81 at 63.536 kb on + strand, within GFF81 at 63.537 kb on - strand, within GFF81 at 63.537 kb on - strand, within GFF81 at 63.537 kb on - strand, within GFF81 at 63.538 kb on + strand, within GFF81 at 63.538 kb on + strand, within GFF81 at 63.539 kb on - strand, within GFF81 at 63.539 kb on - strand, within GFF81 at 63.539 kb on - strand, within GFF81 at 63.557 kb on + strand, within GFF81 at 63.558 kb on - strand, within GFF81 at 63.598 kb on - strand, within GFF81 at 63.746 kb on - strand, within GFF81 at 63.826 kb on + strand, within GFF81 at 63.826 kb on + strand, within GFF81 at 63.827 kb on - strand, within GFF81 at 63.835 kb on + strand, within GFF81 at 63.863 kb on - strand, within GFF81 at 63.900 kb on - strand, within GFF81 at 63.908 kb on + strand, within GFF81 at 63.909 kb on - strand, within GFF81 at 64.085 kb on - strand, within GFF81 at 64.097 kb on - strand, within GFF81 at 64.187 kb on + strand, within GFF81 at 64.230 kb on - strand, within GFF81 at 64.403 kb on - strand, within GFF81 at 64.429 kb on + strand, within GFF81 at 64.552 kb on + strand, within GFF81 at 64.566 kb on - strand, within GFF81 at 64.782 kb on - strand, within GFF81 at 64.997 kb on + strand, within GFF81 at 65.026 kb on - strand, within GFF81 at 65.132 kb on + strand at 65.133 kb on - strand at 65.296 kb on - strand at 65.355 kb on + strand at 65.356 kb on - strand at 65.357 kb on + strand at 65.396 kb on - strand, within GFF82 at 65.528 kb on + strand at 65.572 kb on + strand at 65.809 kb on - strand at 65.874 kb on - strand at 65.917 kb on + strand, within GFF83 at 65.982 kb on - strand, within GFF83 at 66.179 kb on + strand, within GFF83 at 66.228 kb on - strand, within GFF83 at 66.238 kb on - strand, within GFF83
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 62,281 + +0.7 62,295 + -0.2 62,304 - -0.2 62,317 + +0.0 62,318 - +0.1 62,318 - +0.1 62,320 + -0.5 62,320 + -0.1 62,381 - +0.1 62,464 + GFF80 0.19 +0.4 62,704 - GFF80 0.49 +0.2 62,730 + GFF80 0.52 -0.1 62,848 + GFF80 0.67 +1.7 62,966 + GFF80 0.81 +1.0 62,987 + GFF80 0.84 +0.1 62,988 - GFF80 0.84 -1.0 63,087 - +0.1 63,220 + +0.1 63,263 + -0.7 63,316 + -1.5 63,316 + -0.2 63,351 + -0.1 63,448 + GFF81 0.14 +0.8 63,536 + GFF81 0.18 +0.0 63,537 - GFF81 0.18 +0.3 63,537 - GFF81 0.18 +0.3 63,537 - GFF81 0.18 -0.5 63,538 + GFF81 0.18 +0.4 63,538 + GFF81 0.18 +0.5 63,539 - GFF81 0.18 +0.2 63,539 - GFF81 0.18 +0.1 63,539 - GFF81 0.18 +0.4 63,557 + GFF81 0.19 +0.6 63,558 - GFF81 0.19 -1.3 63,598 - GFF81 0.21 +0.0 63,746 - GFF81 0.28 +0.2 63,826 + GFF81 0.31 +0.3 63,826 + GFF81 0.31 -0.4 63,827 - GFF81 0.31 -0.3 63,835 + GFF81 0.32 -0.1 63,863 - GFF81 0.33 +0.1 63,900 - GFF81 0.35 +0.5 63,908 + GFF81 0.35 +0.1 63,909 - GFF81 0.35 +0.3 64,085 - GFF81 0.44 +0.9 64,097 - GFF81 0.44 -0.1 64,187 + GFF81 0.49 +0.6 64,230 - GFF81 0.51 +0.1 64,403 - GFF81 0.59 +0.3 64,429 + GFF81 0.60 -0.5 64,552 + GFF81 0.66 +0.3 64,566 - GFF81 0.66 +0.3 64,782 - GFF81 0.77 +0.0 64,997 + GFF81 0.87 -0.3 65,026 - GFF81 0.88 +0.2 65,132 + -1.0 65,133 - -0.2 65,296 - +0.3 65,355 + +0.1 65,356 - +0.8 65,357 + +0.6 65,396 - GFF82 0.22 -0.1 65,528 + +0.0 65,572 + +0.2 65,809 - -0.1 65,874 - -0.3 65,917 + GFF83 0.11 +0.6 65,982 - GFF83 0.13 +0.7 66,179 + GFF83 0.21 -0.3 66,228 - GFF83 0.23 -0.1 66,238 - GFF83 0.24 -0.5
Or see this region's nucleotide sequence