Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF775 and GFF776 are separated by 7 nucleotides GFF776 and GFF777 are separated by 205 nucleotides GFF777 and GFF778 are separated by 217 nucleotides GFF778 and GFF779 overlap by 4 nucleotides GFF779 and GFF780 are separated by 11 nucleotides GFF780 and GFF781 overlap by 11 nucleotides GFF781 and GFF782 overlap by 1 nucleotides
GFF775 - putative excisionase, at 131,029 to 131,271
GFF775
GFF776 - Phage protein, at 131,279 to 131,431
GFF776
GFF777 - COG0419: ATPase involved in DNA repair, at 131,637 to 131,945
GFF777
GFF778 - Mobile element protein, at 132,163 to 132,408
GFF778
GFF779 - Ant protein, at 132,405 to 132,740
GFF779
GFF780 - FIG00643896: hypothetical protein, at 132,752 to 133,147
GFF780
GFF781 - Phage protein, at 133,137 to 133,373
GFF781
GFF782 - hypothetical protein, at 133,373 to 133,732
GFF782
Position (kb) 132
133 Strain fitness (log2 ratio) -1
0
1 at 131.249 kb on - strand at 131.255 kb on + strand at 131.260 kb on - strand at 131.467 kb on + strand at 131.469 kb on + strand at 131.470 kb on - strand at 131.483 kb on + strand at 131.584 kb on - strand at 131.639 kb on - strand at 131.639 kb on - strand at 131.708 kb on - strand, within GFF777 at 131.839 kb on + strand, within GFF777 at 131.910 kb on + strand, within GFF777 at 131.922 kb on - strand at 132.047 kb on + strand at 132.048 kb on - strand at 132.236 kb on + strand, within GFF778 at 132.246 kb on + strand, within GFF778 at 132.721 kb on - strand at 133.094 kb on - strand, within GFF780 at 133.094 kb on - strand, within GFF780 at 133.193 kb on + strand, within GFF781 at 133.246 kb on - strand, within GFF781
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 131,249 - -1.1 131,255 + +0.2 131,260 - -0.6 131,467 + -0.3 131,469 + +0.0 131,470 - +0.4 131,483 + +0.0 131,584 - +0.5 131,639 - +0.1 131,639 - -0.2 131,708 - GFF777 0.23 +0.2 131,839 + GFF777 0.65 -0.4 131,910 + GFF777 0.88 +0.5 131,922 - -0.2 132,047 + +0.2 132,048 - -0.1 132,236 + GFF778 0.30 -0.9 132,246 + GFF778 0.34 -1.1 132,721 - +0.5 133,094 - GFF780 0.86 +1.1 133,094 - GFF780 0.86 -0.2 133,193 + GFF781 0.24 -0.0 133,246 - GFF781 0.46 -0.2
Or see this region's nucleotide sequence