Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF736

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF734 and GFF735 are separated by 22 nucleotidesGFF735 and GFF736 are separated by 10 nucleotidesGFF736 and GFF737 are separated by 32 nucleotidesGFF737 and GFF738 are separated by 63 nucleotides GFF734 - putative cytoplasmic protein, at 93,245 to 93,760 GFF734 GFF735 - Electron transfer flavoprotein, beta subunit, at 93,783 to 94,532 GFF735 GFF736 - Electron transfer flavoprotein, alpha subunit, at 94,543 to 95,490 GFF736 GFF737 - FIG01047477: hypothetical protein, at 95,523 to 95,720 GFF737 GFF738 - Probable acyl-CoA dehydrogenase (EC 1.3.99.3), at 95,784 to 96,947 GFF738 Position (kb) 94 95 96Strain fitness (log2 ratio) -1 0 1at 93.578 kb on - strand, within GFF734at 93.768 kb on - strandat 94.734 kb on - strand, within GFF736at 94.989 kb on - strand, within GFF736at 95.129 kb on + strand, within GFF736at 95.993 kb on + strand, within GFF738at 96.014 kb on + strand, within GFF738at 96.066 kb on - strand, within GFF738at 96.122 kb on + strand, within GFF738

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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93,578 - GFF734 0.65 +0.2
93,768 - -1.7
94,734 - GFF736 0.20 -1.0
94,989 - GFF736 0.47 -0.4
95,129 + GFF736 0.62 -0.3
95,993 + GFF738 0.18 -0.1
96,014 + GFF738 0.20 +1.0
96,066 - GFF738 0.24 -0.4
96,122 + GFF738 0.29 -0.2

Or see this region's nucleotide sequence