Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF721

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF720 and GFF721 are separated by 261 nucleotidesGFF721 and GFF722 are separated by 77 nucleotides GFF720 - FIG01046262: hypothetical protein, at 75,997 to 77,262 GFF720 GFF721 - HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217), at 77,524 to 78,333 GFF721 GFF722 - Pyruvate formate-lyase (EC 2.3.1.54), at 78,411 to 80,843 GFF722 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1at 76.588 kb on - strand, within GFF720at 76.716 kb on + strand, within GFF720at 76.768 kb on + strand, within GFF720at 76.907 kb on + strand, within GFF720at 76.907 kb on + strand, within GFF720at 76.907 kb on + strand, within GFF720at 76.907 kb on + strand, within GFF720at 77.073 kb on + strand, within GFF720at 77.074 kb on - strand, within GFF720at 77.112 kb on + strand, within GFF720at 77.135 kb on - strand, within GFF720at 77.262 kb on + strandat 77.263 kb on - strandat 77.263 kb on - strandat 77.520 kb on - strandat 77.520 kb on - strandat 77.524 kb on - strandat 77.584 kb on + strandat 77.595 kb on - strandat 77.632 kb on - strand, within GFF721at 77.668 kb on + strand, within GFF721at 77.741 kb on - strand, within GFF721at 77.820 kb on + strand, within GFF721at 77.860 kb on + strand, within GFF721at 77.861 kb on - strand, within GFF721at 77.931 kb on - strand, within GFF721at 77.964 kb on + strand, within GFF721at 78.023 kb on + strand, within GFF721at 78.024 kb on - strand, within GFF721at 78.096 kb on + strand, within GFF721at 78.205 kb on + strand, within GFF721at 78.364 kb on - strandat 78.387 kb on + strandat 78.419 kb on + strandat 78.419 kb on + strandat 78.420 kb on - strandat 78.420 kb on - strandat 78.440 kb on + strandat 78.442 kb on + strandat 78.575 kb on + strandat 78.708 kb on + strand, within GFF722at 78.755 kb on + strand, within GFF722at 78.791 kb on + strand, within GFF722at 78.821 kb on + strand, within GFF722at 78.874 kb on + strand, within GFF722at 78.874 kb on + strand, within GFF722at 78.875 kb on - strand, within GFF722at 78.912 kb on - strand, within GFF722at 78.937 kb on + strand, within GFF722at 78.937 kb on + strand, within GFF722at 78.938 kb on - strand, within GFF722at 78.938 kb on - strand, within GFF722at 79.313 kb on - strand, within GFF722

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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76,588 - GFF720 0.47 +1.2
76,716 + GFF720 0.57 +0.6
76,768 + GFF720 0.61 -0.2
76,907 + GFF720 0.72 +0.1
76,907 + GFF720 0.72 -0.0
76,907 + GFF720 0.72 -0.1
76,907 + GFF720 0.72 +0.2
77,073 + GFF720 0.85 +0.2
77,074 - GFF720 0.85 -0.2
77,112 + GFF720 0.88 -0.2
77,135 - GFF720 0.90 +0.5
77,262 + -0.1
77,263 - +0.1
77,263 - +0.2
77,520 - +0.4
77,520 - +0.6
77,524 - +0.2
77,584 + +1.1
77,595 - +0.8
77,632 - GFF721 0.13 +0.8
77,668 + GFF721 0.18 -0.0
77,741 - GFF721 0.27 +1.2
77,820 + GFF721 0.37 -0.4
77,860 + GFF721 0.41 -0.2
77,861 - GFF721 0.42 +0.3
77,931 - GFF721 0.50 +0.3
77,964 + GFF721 0.54 +0.6
78,023 + GFF721 0.62 +0.3
78,024 - GFF721 0.62 +0.7
78,096 + GFF721 0.71 +0.3
78,205 + GFF721 0.84 -0.0
78,364 - +0.4
78,387 + -0.2
78,419 + -0.5
78,419 + +0.3
78,420 - +0.2
78,420 - +0.1
78,440 + +0.2
78,442 + +0.2
78,575 + +0.3
78,708 + GFF722 0.12 +0.1
78,755 + GFF722 0.14 -0.3
78,791 + GFF722 0.16 -0.1
78,821 + GFF722 0.17 +0.4
78,874 + GFF722 0.19 -1.4
78,874 + GFF722 0.19 +1.1
78,875 - GFF722 0.19 -0.2
78,912 - GFF722 0.21 +0.5
78,937 + GFF722 0.22 -0.5
78,937 + GFF722 0.22 +0.2
78,938 - GFF722 0.22 +0.6
78,938 - GFF722 0.22 -0.3
79,313 - GFF722 0.37 -0.7

Or see this region's nucleotide sequence