Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF720 and GFF721 are separated by 261 nucleotides GFF721 and GFF722 are separated by 77 nucleotides
GFF720 - FIG01046262: hypothetical protein, at 75,997 to 77,262
GFF720
GFF721 - HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217), at 77,524 to 78,333
GFF721
GFF722 - Pyruvate formate-lyase (EC 2.3.1.54), at 78,411 to 80,843
GFF722
Position (kb)
77
78
79 Strain fitness (log2 ratio)
-1
0
1 at 76.588 kb on - strand, within GFF720 at 76.716 kb on + strand, within GFF720 at 76.768 kb on + strand, within GFF720 at 76.907 kb on + strand, within GFF720 at 76.907 kb on + strand, within GFF720 at 76.907 kb on + strand, within GFF720 at 76.907 kb on + strand, within GFF720 at 77.073 kb on + strand, within GFF720 at 77.074 kb on - strand, within GFF720 at 77.112 kb on + strand, within GFF720 at 77.135 kb on - strand, within GFF720 at 77.262 kb on + strand at 77.263 kb on - strand at 77.263 kb on - strand at 77.520 kb on - strand at 77.520 kb on - strand at 77.524 kb on - strand at 77.584 kb on + strand at 77.595 kb on - strand at 77.632 kb on - strand, within GFF721 at 77.668 kb on + strand, within GFF721 at 77.741 kb on - strand, within GFF721 at 77.820 kb on + strand, within GFF721 at 77.860 kb on + strand, within GFF721 at 77.861 kb on - strand, within GFF721 at 77.931 kb on - strand, within GFF721 at 77.964 kb on + strand, within GFF721 at 78.023 kb on + strand, within GFF721 at 78.024 kb on - strand, within GFF721 at 78.096 kb on + strand, within GFF721 at 78.205 kb on + strand, within GFF721 at 78.364 kb on - strand at 78.387 kb on + strand at 78.419 kb on + strand at 78.419 kb on + strand at 78.420 kb on - strand at 78.420 kb on - strand at 78.440 kb on + strand at 78.442 kb on + strand at 78.575 kb on + strand at 78.708 kb on + strand, within GFF722 at 78.755 kb on + strand, within GFF722 at 78.791 kb on + strand, within GFF722 at 78.821 kb on + strand, within GFF722 at 78.874 kb on + strand, within GFF722 at 78.874 kb on + strand, within GFF722 at 78.875 kb on - strand, within GFF722 at 78.912 kb on - strand, within GFF722 at 78.937 kb on + strand, within GFF722 at 78.937 kb on + strand, within GFF722 at 78.938 kb on - strand, within GFF722 at 78.938 kb on - strand, within GFF722 at 79.313 kb on - strand, within GFF722
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 76,588 - GFF720 0.47 +1.2 76,716 + GFF720 0.57 +0.6 76,768 + GFF720 0.61 -0.2 76,907 + GFF720 0.72 +0.1 76,907 + GFF720 0.72 -0.0 76,907 + GFF720 0.72 -0.1 76,907 + GFF720 0.72 +0.2 77,073 + GFF720 0.85 +0.2 77,074 - GFF720 0.85 -0.2 77,112 + GFF720 0.88 -0.2 77,135 - GFF720 0.90 +0.5 77,262 + -0.1 77,263 - +0.1 77,263 - +0.2 77,520 - +0.4 77,520 - +0.6 77,524 - +0.2 77,584 + +1.1 77,595 - +0.8 77,632 - GFF721 0.13 +0.8 77,668 + GFF721 0.18 -0.0 77,741 - GFF721 0.27 +1.2 77,820 + GFF721 0.37 -0.4 77,860 + GFF721 0.41 -0.2 77,861 - GFF721 0.42 +0.3 77,931 - GFF721 0.50 +0.3 77,964 + GFF721 0.54 +0.6 78,023 + GFF721 0.62 +0.3 78,024 - GFF721 0.62 +0.7 78,096 + GFF721 0.71 +0.3 78,205 + GFF721 0.84 -0.0 78,364 - +0.4 78,387 + -0.2 78,419 + -0.5 78,419 + +0.3 78,420 - +0.2 78,420 - +0.1 78,440 + +0.2 78,442 + +0.2 78,575 + +0.3 78,708 + GFF722 0.12 +0.1 78,755 + GFF722 0.14 -0.3 78,791 + GFF722 0.16 -0.1 78,821 + GFF722 0.17 +0.4 78,874 + GFF722 0.19 -1.4 78,874 + GFF722 0.19 +1.1 78,875 - GFF722 0.19 -0.2 78,912 - GFF722 0.21 +0.5 78,937 + GFF722 0.22 -0.5 78,937 + GFF722 0.22 +0.2 78,938 - GFF722 0.22 +0.6 78,938 - GFF722 0.22 -0.3 79,313 - GFF722 0.37 -0.7
Or see this region's nucleotide sequence