Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF70 and GFF71 overlap by 1 nucleotides GFF71 and GFF72 overlap by 4 nucleotides GFF72 and GFF73 are separated by 18 nucleotides GFF73 and GFF74 are separated by 17 nucleotides
GFF70 - Minor fimbrial subunit StfG, at 52,825 to 53,355
GFF70
GFF71 - Minor fimbrial subunit StfF, at 53,355 to 53,831
GFF71
GFF72 - Minor fimbrial subunit StfE, at 53,828 to 54,340
GFF72
GFF73 - Periplasmic fimbrial chaperone StfD, at 54,359 to 55,111
GFF73
GFF74 - Fimbriae usher protein StfC, at 55,129 to 57,786
GFF74
Position (kb) 53
54
55 Strain fitness (log2 ratio) -1
0
1 at 52.828 kb on + strand at 52.828 kb on + strand at 53.031 kb on - strand, within GFF70 at 53.034 kb on + strand, within GFF70 at 53.034 kb on + strand, within GFF70 at 53.036 kb on + strand, within GFF70 at 53.146 kb on - strand, within GFF70 at 53.490 kb on - strand, within GFF71 at 53.730 kb on - strand, within GFF71 at 53.835 kb on + strand at 54.257 kb on - strand, within GFF72 at 54.406 kb on + strand at 54.407 kb on - strand at 54.450 kb on + strand, within GFF73 at 54.589 kb on - strand, within GFF73 at 54.589 kb on - strand, within GFF73 at 54.645 kb on + strand, within GFF73 at 54.649 kb on - strand, within GFF73 at 54.649 kb on - strand, within GFF73 at 54.890 kb on + strand, within GFF73 at 54.945 kb on + strand, within GFF73 at 54.992 kb on - strand, within GFF73 at 55.191 kb on + strand at 55.191 kb on + strand at 55.192 kb on - strand at 55.205 kb on - strand at 55.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 52,828 + -0.5 52,828 + -0.2 53,031 - GFF70 0.39 +0.1 53,034 + GFF70 0.39 -0.0 53,034 + GFF70 0.39 +0.4 53,036 + GFF70 0.40 -0.6 53,146 - GFF70 0.60 -0.4 53,490 - GFF71 0.28 -0.2 53,730 - GFF71 0.79 +0.1 53,835 + -0.8 54,257 - GFF72 0.84 +0.7 54,406 + -0.3 54,407 - -0.1 54,450 + GFF73 0.12 +0.7 54,589 - GFF73 0.31 +0.1 54,589 - GFF73 0.31 +0.2 54,645 + GFF73 0.38 +0.3 54,649 - GFF73 0.39 -1.3 54,649 - GFF73 0.39 +1.0 54,890 + GFF73 0.71 -1.0 54,945 + GFF73 0.78 -0.5 54,992 - GFF73 0.84 +0.0 55,191 + +0.5 55,191 + -0.4 55,192 - -0.2 55,205 - +0.9 55,326 + +0.6
Or see this region's nucleotide sequence