Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF550 and GFF551 overlap by 4 nucleotides GFF551 and GFF552 are separated by 1 nucleotides GFF552 and GFF553 are separated by 131 nucleotides
GFF550 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 281,668 to 282,945
GFF550
GFF551 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 282,942 to 283,709
GFF551
GFF552 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 283,711 to 284,424
GFF552
GFF553 - RelB/StbD replicon stabilization protein (antitoxin to RelE/StbE), at 284,556 to 284,777
GFF553
Position (kb) 282
283
284 Strain fitness (log2 ratio) -1
0
1 at 282.029 kb on - strand, within GFF550 at 282.118 kb on + strand, within GFF550 at 282.118 kb on + strand, within GFF550 at 282.120 kb on + strand, within GFF550 at 282.146 kb on - strand, within GFF550 at 282.146 kb on - strand, within GFF550 at 282.286 kb on - strand, within GFF550 at 282.579 kb on - strand, within GFF550 at 282.616 kb on - strand, within GFF550 at 282.955 kb on + strand at 283.085 kb on + strand, within GFF551 at 283.104 kb on + strand, within GFF551 at 283.541 kb on + strand, within GFF551 at 283.580 kb on + strand, within GFF551 at 283.693 kb on - strand at 283.708 kb on - strand at 283.708 kb on - strand at 283.908 kb on + strand, within GFF552 at 283.917 kb on - strand, within GFF552 at 284.059 kb on - strand, within GFF552 at 284.072 kb on - strand, within GFF552 at 284.183 kb on + strand, within GFF552 at 284.184 kb on - strand, within GFF552 at 284.410 kb on + strand at 284.411 kb on - strand at 284.530 kb on - strand at 284.538 kb on - strand at 284.571 kb on + strand at 284.572 kb on - strand at 284.572 kb on - strand at 284.572 kb on - strand at 284.654 kb on + strand, within GFF553
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 282,029 - GFF550 0.28 -0.4 282,118 + GFF550 0.35 -0.1 282,118 + GFF550 0.35 -0.0 282,120 + GFF550 0.35 +0.1 282,146 - GFF550 0.37 -0.2 282,146 - GFF550 0.37 +0.4 282,286 - GFF550 0.48 +0.1 282,579 - GFF550 0.71 -0.1 282,616 - GFF550 0.74 +0.0 282,955 + -0.1 283,085 + GFF551 0.19 -1.0 283,104 + GFF551 0.21 +0.1 283,541 + GFF551 0.78 -0.6 283,580 + GFF551 0.83 -0.1 283,693 - -0.5 283,708 - +0.9 283,708 - +0.5 283,908 + GFF552 0.28 +0.2 283,917 - GFF552 0.29 +0.7 284,059 - GFF552 0.49 -0.2 284,072 - GFF552 0.51 -0.1 284,183 + GFF552 0.66 -0.0 284,184 - GFF552 0.66 +0.5 284,410 + +0.2 284,411 - -0.2 284,530 - -0.2 284,538 - +0.1 284,571 + -0.8 284,572 - +0.5 284,572 - -1.6 284,572 - -0.4 284,654 + GFF553 0.44 -0.1
Or see this region's nucleotide sequence