Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF531 and GFF532 are separated by 3 nucleotides GFF532 and GFF533 are separated by 72 nucleotides GFF533 and GFF534 are separated by 4 nucleotides GFF534 and GFF535 are separated by 23 nucleotides
GFF531 - Transporter, putative, at 263,638 to 264,855
GFF531
GFF532 - DcrB protein precursor, at 264,859 to 265,416
GFF532
GFF533 - Putative preQ0 transporter, at 265,489 to 266,229
GFF533
GFF534 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusA, at 266,234 to 266,569
GFF534
GFF535 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 266,593 to 268,236
GFF535
Position (kb) 265
266
267 Strain fitness (log2 ratio) -2
-1
0
1 at 264.670 kb on + strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.671 kb on - strand, within GFF531 at 264.864 kb on + strand at 264.865 kb on - strand at 264.876 kb on + strand at 264.877 kb on - strand at 265.035 kb on + strand, within GFF532 at 265.053 kb on + strand, within GFF532 at 265.054 kb on - strand, within GFF532 at 265.059 kb on + strand, within GFF532 at 265.060 kb on - strand, within GFF532 at 265.060 kb on - strand, within GFF532 at 265.093 kb on - strand, within GFF532 at 265.206 kb on + strand, within GFF532 at 265.344 kb on + strand, within GFF532 at 265.397 kb on + strand at 265.397 kb on + strand at 265.522 kb on - strand at 265.607 kb on + strand, within GFF533 at 265.644 kb on + strand, within GFF533 at 265.807 kb on - strand, within GFF533 at 265.883 kb on + strand, within GFF533 at 265.883 kb on + strand, within GFF533 at 265.884 kb on - strand, within GFF533 at 265.904 kb on + strand, within GFF533 at 265.904 kb on + strand, within GFF533 at 266.102 kb on - strand, within GFF533 at 266.102 kb on - strand, within GFF533 at 266.126 kb on - strand, within GFF533 at 266.142 kb on + strand, within GFF533 at 266.208 kb on + strand at 266.211 kb on + strand at 266.212 kb on - strand at 266.582 kb on + strand at 266.582 kb on + strand at 266.583 kb on - strand at 266.585 kb on + strand at 266.586 kb on - strand at 266.650 kb on + strand at 266.877 kb on + strand, within GFF535 at 267.031 kb on + strand, within GFF535 at 267.088 kb on + strand, within GFF535 at 267.112 kb on - strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 264,670 + GFF531 0.85 -0.2 264,671 - GFF531 0.85 +1.3 264,671 - GFF531 0.85 -0.4 264,671 - GFF531 0.85 +0.9 264,671 - GFF531 0.85 -0.7 264,864 + +0.1 264,865 - -1.2 264,876 + +0.3 264,877 - +0.8 265,035 + GFF532 0.32 -1.6 265,053 + GFF532 0.35 -0.6 265,054 - GFF532 0.35 +0.9 265,059 + GFF532 0.36 -0.2 265,060 - GFF532 0.36 -2.4 265,060 - GFF532 0.36 -0.5 265,093 - GFF532 0.42 +0.2 265,206 + GFF532 0.62 -1.1 265,344 + GFF532 0.87 -0.6 265,397 + -1.4 265,397 + +0.1 265,522 - +0.1 265,607 + GFF533 0.16 +0.3 265,644 + GFF533 0.21 +0.2 265,807 - GFF533 0.43 +0.2 265,883 + GFF533 0.53 +0.3 265,883 + GFF533 0.53 -0.1 265,884 - GFF533 0.53 -0.6 265,904 + GFF533 0.56 -0.6 265,904 + GFF533 0.56 -0.2 266,102 - GFF533 0.83 +0.3 266,102 - GFF533 0.83 -0.0 266,126 - GFF533 0.86 -0.2 266,142 + GFF533 0.88 -0.5 266,208 + +0.1 266,211 + -0.1 266,212 - +0.2 266,582 + +0.1 266,582 + +0.2 266,583 - +0.0 266,585 + -0.1 266,586 - +0.5 266,650 + +0.5 266,877 + GFF535 0.17 +0.8 267,031 + GFF535 0.27 +0.9 267,088 + GFF535 0.30 +0.1 267,112 - GFF535 0.32 +0.2 267,199 + GFF535 0.37 +0.5 267,199 + GFF535 0.37 +0.2 267,199 + GFF535 0.37 +1.4 267,199 + GFF535 0.37 +0.6
Or see this region's nucleotide sequence