Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF503 and GFF504 are separated by 627 nucleotides GFF504 and GFF505 are separated by 5 nucleotides GFF505 and GFF506 are separated by 280 nucleotides
GFF503 - LysR family transcriptional regulator YhjC, at 231,478 to 232,380
GFF503
GFF504 - Putative regulator, at 233,008 to 233,610
GFF504
GFF505 - Phage-like lysozyme, at 233,616 to 233,972
GFF505
GFF506 - Putative inner membrane protein, at 234,253 to 235,842
GFF506
Position (kb) 233
234 Strain fitness (log2 ratio) -1
0
1 at 232.086 kb on + strand, within GFF503 at 232.087 kb on - strand, within GFF503 at 232.087 kb on - strand, within GFF503 at 232.091 kb on - strand, within GFF503 at 232.203 kb on + strand, within GFF503 at 232.450 kb on + strand at 232.620 kb on + strand at 232.620 kb on + strand at 232.621 kb on - strand at 232.621 kb on - strand at 232.625 kb on - strand at 232.632 kb on - strand at 232.766 kb on - strand at 233.238 kb on + strand, within GFF504 at 233.241 kb on + strand, within GFF504 at 233.511 kb on + strand, within GFF504 at 233.760 kb on + strand, within GFF505 at 233.760 kb on + strand, within GFF505 at 233.819 kb on + strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.853 kb on - strand, within GFF505 at 233.877 kb on - strand, within GFF505 at 233.924 kb on + strand, within GFF505 at 234.001 kb on + strand at 234.001 kb on + strand at 234.185 kb on - strand at 234.188 kb on + strand at 234.204 kb on + strand at 234.252 kb on - strand at 234.298 kb on - strand at 234.477 kb on + strand, within GFF506 at 234.477 kb on + strand, within GFF506 at 234.518 kb on - strand, within GFF506 at 234.590 kb on + strand, within GFF506 at 234.591 kb on - strand, within GFF506
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 232,086 + GFF503 0.67 +0.5 232,087 - GFF503 0.67 +0.0 232,087 - GFF503 0.67 +0.8 232,091 - GFF503 0.68 -0.5 232,203 + GFF503 0.80 -1.6 232,450 + +0.1 232,620 + -0.5 232,620 + +0.3 232,621 - +0.3 232,621 - -0.3 232,625 - +0.6 232,632 - -0.4 232,766 - +0.4 233,238 + GFF504 0.38 -0.9 233,241 + GFF504 0.39 +1.6 233,511 + GFF504 0.83 +0.8 233,760 + GFF505 0.40 +0.1 233,760 + GFF505 0.40 +0.8 233,819 + GFF505 0.57 +0.1 233,853 - GFF505 0.66 -0.6 233,853 - GFF505 0.66 -0.0 233,853 - GFF505 0.66 +0.6 233,877 - GFF505 0.73 +0.4 233,924 + GFF505 0.86 -0.9 234,001 + -0.5 234,001 + -0.7 234,185 - +0.2 234,188 + +0.3 234,204 + +0.4 234,252 - -0.3 234,298 - +0.4 234,477 + GFF506 0.14 +0.3 234,477 + GFF506 0.14 +0.0 234,518 - GFF506 0.17 -0.1 234,590 + GFF506 0.21 -0.3 234,591 - GFF506 0.21 -0.7
Or see this region's nucleotide sequence