Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF490

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF488 and GFF489 are separated by 0 nucleotidesGFF489 and GFF490 overlap by 4 nucleotidesGFF490 and GFF491 are separated by 10 nucleotides GFF488 - FIG004405: Putative cytoplasmic protein, at 208,659 to 208,862 GFF488 GFF489 - Cellulose synthase, putative, at 208,863 to 209,615 GFF489 GFF490 - Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12), at 209,612 to 212,236 GFF490 GFF491 - Cyclic di-GMP binding protein precursor, at 212,247 to 214,547 GFF491 Position (kb) 209 210 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2at 208.949 kb on - strand, within GFF489at 209.080 kb on + strand, within GFF489at 209.085 kb on + strand, within GFF489at 209.086 kb on - strand, within GFF489at 209.087 kb on + strand, within GFF489at 209.087 kb on + strand, within GFF489at 209.088 kb on - strand, within GFF489at 209.216 kb on + strand, within GFF489at 209.216 kb on + strand, within GFF489at 209.217 kb on - strand, within GFF489at 209.288 kb on + strand, within GFF489at 209.398 kb on + strand, within GFF489at 209.514 kb on + strand, within GFF489at 209.807 kb on + strandat 209.815 kb on + strandat 209.958 kb on - strand, within GFF490at 210.041 kb on - strand, within GFF490at 210.124 kb on + strand, within GFF490at 210.188 kb on - strand, within GFF490at 210.188 kb on - strand, within GFF490at 210.248 kb on + strand, within GFF490at 210.250 kb on + strand, within GFF490at 210.266 kb on - strand, within GFF490at 210.455 kb on + strand, within GFF490at 210.455 kb on + strand, within GFF490at 210.491 kb on + strand, within GFF490at 210.492 kb on - strand, within GFF490at 210.492 kb on - strand, within GFF490at 210.533 kb on - strand, within GFF490at 210.599 kb on + strand, within GFF490at 210.600 kb on - strand, within GFF490at 210.883 kb on + strand, within GFF490at 210.884 kb on - strand, within GFF490at 210.988 kb on + strand, within GFF490at 210.988 kb on + strand, within GFF490at 210.989 kb on - strand, within GFF490at 211.019 kb on - strand, within GFF490at 211.028 kb on + strand, within GFF490at 211.029 kb on - strand, within GFF490at 211.093 kb on + strand, within GFF490at 211.269 kb on - strand, within GFF490at 211.269 kb on - strand, within GFF490at 211.303 kb on - strand, within GFF490at 211.339 kb on + strand, within GFF490at 211.362 kb on - strand, within GFF490at 211.362 kb on - strand, within GFF490at 211.409 kb on + strand, within GFF490at 211.410 kb on - strand, within GFF490at 211.410 kb on - strand, within GFF490at 211.500 kb on - strand, within GFF490at 211.529 kb on - strand, within GFF490at 211.583 kb on + strand, within GFF490at 211.584 kb on - strand, within GFF490at 211.584 kb on - strand, within GFF490at 211.640 kb on + strand, within GFF490at 211.640 kb on + strand, within GFF490at 211.641 kb on - strand, within GFF490at 211.641 kb on - strand, within GFF490at 211.688 kb on - strand, within GFF490at 211.773 kb on + strand, within GFF490at 211.877 kb on + strand, within GFF490at 211.958 kb on - strand, within GFF490at 211.976 kb on - strandat 212.014 kb on + strandat 212.030 kb on - strandat 212.112 kb on + strandat 212.196 kb on + strandat 212.241 kb on - strandat 212.291 kb on - strandat 212.462 kb on + strandat 212.557 kb on - strand, within GFF491at 212.677 kb on + strand, within GFF491at 212.677 kb on + strand, within GFF491at 212.677 kb on + strand, within GFF491at 212.678 kb on - strand, within GFF491at 212.681 kb on + strand, within GFF491at 212.682 kb on - strand, within GFF491at 212.696 kb on + strand, within GFF491at 212.798 kb on + strand, within GFF491at 212.817 kb on + strand, within GFF491at 212.817 kb on + strand, within GFF491at 212.817 kb on + strand, within GFF491at 212.818 kb on - strand, within GFF491at 212.818 kb on - strand, within GFF491at 213.012 kb on + strand, within GFF491at 213.013 kb on - strand, within GFF491at 213.013 kb on - strand, within GFF491at 213.139 kb on - strand, within GFF491at 213.174 kb on - strand, within GFF491at 213.174 kb on - strand, within GFF491at 213.216 kb on - strand, within GFF491at 213.216 kb on - strand, within GFF491

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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208,949 - GFF489 0.11 +0.2
209,080 + GFF489 0.29 +0.9
209,085 + GFF489 0.29 +0.8
209,086 - GFF489 0.30 +1.0
209,087 + GFF489 0.30 +0.4
209,087 + GFF489 0.30 +0.5
209,088 - GFF489 0.30 +0.4
209,216 + GFF489 0.47 +0.1
209,216 + GFF489 0.47 +0.4
209,217 - GFF489 0.47 -1.0
209,288 + GFF489 0.56 +0.0
209,398 + GFF489 0.71 +0.3
209,514 + GFF489 0.86 +0.4
209,807 + +0.8
209,815 + +0.2
209,958 - GFF490 0.13 +0.2
210,041 - GFF490 0.16 -0.3
210,124 + GFF490 0.20 +0.2
210,188 - GFF490 0.22 +0.4
210,188 - GFF490 0.22 +0.2
210,248 + GFF490 0.24 +0.6
210,250 + GFF490 0.24 +0.7
210,266 - GFF490 0.25 +0.1
210,455 + GFF490 0.32 +0.0
210,455 + GFF490 0.32 +0.3
210,491 + GFF490 0.33 +0.5
210,492 - GFF490 0.34 +0.3
210,492 - GFF490 0.34 -0.5
210,533 - GFF490 0.35 +0.1
210,599 + GFF490 0.38 +0.2
210,600 - GFF490 0.38 +0.3
210,883 + GFF490 0.48 +0.3
210,884 - GFF490 0.48 +0.3
210,988 + GFF490 0.52 +0.4
210,988 + GFF490 0.52 +0.5
210,989 - GFF490 0.52 +0.5
211,019 - GFF490 0.54 +0.2
211,028 + GFF490 0.54 +0.3
211,029 - GFF490 0.54 +1.0
211,093 + GFF490 0.56 +0.8
211,269 - GFF490 0.63 -0.1
211,269 - GFF490 0.63 +0.4
211,303 - GFF490 0.64 +0.2
211,339 + GFF490 0.66 +0.1
211,362 - GFF490 0.67 +0.0
211,362 - GFF490 0.67 +0.1
211,409 + GFF490 0.68 +0.2
211,410 - GFF490 0.68 +0.4
211,410 - GFF490 0.68 +0.5
211,500 - GFF490 0.72 +0.1
211,529 - GFF490 0.73 +0.4
211,583 + GFF490 0.75 +0.4
211,584 - GFF490 0.75 -0.9
211,584 - GFF490 0.75 +0.6
211,640 + GFF490 0.77 -0.4
211,640 + GFF490 0.77 -0.4
211,641 - GFF490 0.77 +0.3
211,641 - GFF490 0.77 +0.4
211,688 - GFF490 0.79 +1.0
211,773 + GFF490 0.82 -2.0
211,877 + GFF490 0.86 +0.0
211,958 - GFF490 0.89 +0.1
211,976 - +0.1
212,014 + -0.1
212,030 - +1.1
212,112 + +0.5
212,196 + +0.4
212,241 - +0.1
212,291 - -0.1
212,462 + +0.3
212,557 - GFF491 0.13 +0.4
212,677 + GFF491 0.19 +0.2
212,677 + GFF491 0.19 +0.2
212,677 + GFF491 0.19 +0.3
212,678 - GFF491 0.19 -0.6
212,681 + GFF491 0.19 -0.0
212,682 - GFF491 0.19 -0.0
212,696 + GFF491 0.20 +0.2
212,798 + GFF491 0.24 +0.1
212,817 + GFF491 0.25 +0.0
212,817 + GFF491 0.25 +0.4
212,817 + GFF491 0.25 +0.7
212,818 - GFF491 0.25 +0.3
212,818 - GFF491 0.25 +1.2
213,012 + GFF491 0.33 -0.5
213,013 - GFF491 0.33 +0.0
213,013 - GFF491 0.33 +2.0
213,139 - GFF491 0.39 +0.2
213,174 - GFF491 0.40 +0.6
213,174 - GFF491 0.40 +0.1
213,216 - GFF491 0.42 +0.3
213,216 - GFF491 0.42 +0.4

Or see this region's nucleotide sequence