Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4889 and GFF4890 are separated by 44 nucleotides GFF4890 and GFF4891 are separated by 0 nucleotides
GFF4889 - Leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.6), at 5,199 to 5,903
GFF4889
GFF4890 - Transport ATP-binding protein CydC, at 5,948 to 7,669
GFF4890
GFF4891 - Transport ATP-binding protein CydD, at 7,670 to 9,436
GFF4891
Position (kb) 5
6
7
8 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5.069 kb on + strand at 5.080 kb on + strand at 5.080 kb on + strand at 5.081 kb on - strand at 5.081 kb on - strand at 5.082 kb on + strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.083 kb on - strand at 5.113 kb on - strand at 5.135 kb on - strand at 5.168 kb on - strand at 5.470 kb on + strand, within GFF4889 at 5.558 kb on + strand, within GFF4889 at 5.788 kb on - strand, within GFF4889 at 5.941 kb on + strand at 5.949 kb on + strand at 6.122 kb on + strand, within GFF4890 at 6.274 kb on + strand, within GFF4890 at 6.274 kb on + strand, within GFF4890 at 6.887 kb on + strand, within GFF4890 at 6.887 kb on + strand, within GFF4890 at 6.888 kb on - strand, within GFF4890 at 6.888 kb on - strand, within GFF4890 at 7.204 kb on + strand, within GFF4890 at 7.358 kb on + strand, within GFF4890 at 7.359 kb on - strand, within GFF4890 at 7.377 kb on + strand, within GFF4890 at 7.492 kb on + strand, within GFF4890 at 7.493 kb on - strand, within GFF4890 at 7.495 kb on - strand, within GFF4890 at 7.495 kb on - strand, within GFF4890 at 7.617 kb on - strand at 7.627 kb on + strand at 7.651 kb on - strand at 7.672 kb on - strand at 7.672 kb on - strand at 8.012 kb on + strand, within GFF4891 at 8.108 kb on + strand, within GFF4891 at 8.136 kb on - strand, within GFF4891 at 8.233 kb on - strand, within GFF4891 at 8.249 kb on + strand, within GFF4891 at 8.252 kb on + strand, within GFF4891 at 8.369 kb on - strand, within GFF4891 at 8.372 kb on - strand, within GFF4891 at 8.372 kb on - strand, within GFF4891 at 8.372 kb on - strand, within GFF4891 at 8.372 kb on - strand, within GFF4891 at 8.470 kb on + strand, within GFF4891 at 8.497 kb on + strand, within GFF4891 at 8.506 kb on - strand, within GFF4891 at 8.657 kb on - strand, within GFF4891
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 5,069 + +0.2 5,080 + -0.5 5,080 + +0.9 5,081 - +0.1 5,081 - -0.2 5,082 + -0.3 5,083 - +0.9 5,083 - +0.4 5,083 - +0.3 5,113 - +0.0 5,135 - +0.2 5,168 - -0.4 5,470 + GFF4889 0.38 +0.1 5,558 + GFF4889 0.51 +1.2 5,788 - GFF4889 0.84 +0.1 5,941 + +0.1 5,949 + +1.2 6,122 + GFF4890 0.10 -1.4 6,274 + GFF4890 0.19 -1.7 6,274 + GFF4890 0.19 -1.4 6,887 + GFF4890 0.55 -2.7 6,887 + GFF4890 0.55 -2.1 6,888 - GFF4890 0.55 -3.8 6,888 - GFF4890 0.55 +0.1 7,204 + GFF4890 0.73 +0.5 7,358 + GFF4890 0.82 -2.1 7,359 - GFF4890 0.82 -0.4 7,377 + GFF4890 0.83 -1.6 7,492 + GFF4890 0.90 -0.7 7,493 - GFF4890 0.90 -0.9 7,495 - GFF4890 0.90 -1.1 7,495 - GFF4890 0.90 -1.6 7,617 - +0.6 7,627 + -2.4 7,651 - -0.9 7,672 - +0.4 7,672 - -1.6 8,012 + GFF4891 0.19 +0.5 8,108 + GFF4891 0.25 -0.8 8,136 - GFF4891 0.26 -1.2 8,233 - GFF4891 0.32 -0.4 8,249 + GFF4891 0.33 -2.0 8,252 + GFF4891 0.33 +0.9 8,369 - GFF4891 0.40 -2.0 8,372 - GFF4891 0.40 +0.4 8,372 - GFF4891 0.40 +0.5 8,372 - GFF4891 0.40 -0.6 8,372 - GFF4891 0.40 -0.8 8,470 + GFF4891 0.45 -3.1 8,497 + GFF4891 0.47 -0.8 8,506 - GFF4891 0.47 -1.4 8,657 - GFF4891 0.56 +0.4
Or see this region's nucleotide sequence