Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF480 and GFF481 are separated by 117 nucleotides GFF481 and GFF482 overlap by 4 nucleotides GFF482 and GFF483 are separated by 103 nucleotides GFF483 and GFF484 are separated by 81 nucleotides GFF484 and GFF485 overlap by 4 nucleotides GFF485 and GFF486 overlap by 4 nucleotides
GFF480 - Serine transporter, at 202,849 to 204,147
GFF480
GFF481 - hypothetical protein, at 204,265 to 204,405
GFF481
GFF482 - FIG01047459: hypothetical protein, at 204,402 to 204,662
GFF482
GFF483 - hypothetical protein, at 204,766 to 204,897
GFF483
GFF484 - FIG002337: predicted inner membrane protein, at 204,979 to 206,658
GFF484
GFF485 - FIG005119: putative inner membrane protein, at 206,655 to 206,846
GFF485
GFF486 - FIG005274: hypothetical protein, at 206,843 to 208,402
GFF486
Position (kb) 204
205
206
207 Strain fitness (log2 ratio) -1
0
1 at 204.011 kb on - strand, within GFF480 at 204.147 kb on + strand at 204.184 kb on - strand at 204.197 kb on + strand at 204.198 kb on - strand at 204.210 kb on + strand at 204.211 kb on - strand at 204.398 kb on + strand at 204.398 kb on + strand at 204.399 kb on - strand at 204.464 kb on - strand, within GFF482 at 204.512 kb on + strand, within GFF482 at 204.663 kb on - strand at 204.701 kb on + strand at 204.704 kb on - strand at 204.789 kb on + strand, within GFF483 at 204.789 kb on + strand, within GFF483 at 204.798 kb on + strand, within GFF483 at 205.022 kb on + strand at 205.022 kb on + strand at 205.022 kb on + strand at 205.030 kb on - strand at 205.057 kb on - strand at 205.138 kb on - strand at 205.195 kb on - strand, within GFF484 at 205.195 kb on - strand, within GFF484 at 205.348 kb on + strand, within GFF484 at 205.349 kb on - strand, within GFF484 at 205.359 kb on + strand, within GFF484 at 205.430 kb on + strand, within GFF484 at 205.489 kb on - strand, within GFF484 at 205.566 kb on - strand, within GFF484 at 205.635 kb on + strand, within GFF484 at 205.635 kb on + strand, within GFF484 at 205.635 kb on + strand, within GFF484 at 205.830 kb on - strand, within GFF484 at 205.880 kb on - strand, within GFF484 at 205.935 kb on + strand, within GFF484 at 206.018 kb on + strand, within GFF484 at 206.019 kb on - strand, within GFF484 at 206.219 kb on - strand, within GFF484 at 206.263 kb on + strand, within GFF484 at 206.386 kb on - strand, within GFF484 at 206.486 kb on - strand, within GFF484 at 206.609 kb on + strand at 206.709 kb on + strand, within GFF485 at 206.710 kb on - strand, within GFF485 at 206.731 kb on - strand, within GFF485 at 206.745 kb on - strand, within GFF485 at 206.928 kb on - strand at 206.987 kb on + strand at 206.988 kb on - strand at 207.079 kb on + strand, within GFF486 at 207.157 kb on + strand, within GFF486 at 207.158 kb on - strand, within GFF486 at 207.186 kb on - strand, within GFF486 at 207.192 kb on - strand, within GFF486 at 207.283 kb on + strand, within GFF486 at 207.284 kb on - strand, within GFF486 at 207.413 kb on - strand, within GFF486 at 207.511 kb on + strand, within GFF486 at 207.604 kb on + strand, within GFF486
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 204,011 - GFF480 0.89 -0.1 204,147 + +0.6 204,184 - +0.1 204,197 + +0.2 204,198 - -0.9 204,210 + +0.3 204,211 - -0.2 204,398 + +0.4 204,398 + +0.0 204,399 - -0.1 204,464 - GFF482 0.24 -0.2 204,512 + GFF482 0.42 -0.2 204,663 - -0.1 204,701 + -0.0 204,704 - -0.4 204,789 + GFF483 0.17 +0.3 204,789 + GFF483 0.17 +0.4 204,798 + GFF483 0.24 +0.1 205,022 + +0.8 205,022 + -0.0 205,022 + -0.4 205,030 - +0.7 205,057 - +0.8 205,138 - +1.3 205,195 - GFF484 0.13 +0.9 205,195 - GFF484 0.13 +0.2 205,348 + GFF484 0.22 +0.2 205,349 - GFF484 0.22 -0.6 205,359 + GFF484 0.23 +0.5 205,430 + GFF484 0.27 +0.4 205,489 - GFF484 0.30 +0.5 205,566 - GFF484 0.35 +0.4 205,635 + GFF484 0.39 +0.8 205,635 + GFF484 0.39 -0.1 205,635 + GFF484 0.39 +0.1 205,830 - GFF484 0.51 +0.3 205,880 - GFF484 0.54 -0.1 205,935 + GFF484 0.57 +0.4 206,018 + GFF484 0.62 -0.7 206,019 - GFF484 0.62 +0.3 206,219 - GFF484 0.74 +0.4 206,263 + GFF484 0.76 +0.5 206,386 - GFF484 0.84 +0.7 206,486 - GFF484 0.90 +0.4 206,609 + +0.6 206,709 + GFF485 0.28 +0.5 206,710 - GFF485 0.29 +0.3 206,731 - GFF485 0.40 +0.6 206,745 - GFF485 0.47 +0.5 206,928 - +0.6 206,987 + +0.3 206,988 - +0.1 207,079 + GFF486 0.15 +0.8 207,157 + GFF486 0.20 +0.4 207,158 - GFF486 0.20 +0.0 207,186 - GFF486 0.22 +0.1 207,192 - GFF486 0.22 -0.2 207,283 + GFF486 0.28 -0.0 207,284 - GFF486 0.28 +0.4 207,413 - GFF486 0.37 +0.9 207,511 + GFF486 0.43 +0.3 207,604 + GFF486 0.49 +0.5
Or see this region's nucleotide sequence