Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4799 and GFF4800 are separated by 9 nucleotides GFF4800 and GFF4801 are separated by 250 nucleotides
GFF4799 - Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4), at 102,725 to 104,164
GFF4799
GFF4800 - Sulfate adenylyltransferase subunit 2 (EC 2.7.7.4), at 104,174 to 105,082
GFF4800
GFF4801 - Alkaline phosphatase isozyme conversion protein precursor (EC 3.4.11.-), at 105,333 to 106,379
GFF4801
Position (kb) 104
105
106 Strain fitness (log2 ratio) -1
0
1 at 103.232 kb on + strand, within GFF4799 at 103.411 kb on - strand, within GFF4799 at 103.443 kb on - strand, within GFF4799 at 103.454 kb on + strand, within GFF4799 at 103.455 kb on - strand, within GFF4799 at 103.460 kb on + strand, within GFF4799 at 103.706 kb on - strand, within GFF4799 at 103.711 kb on + strand, within GFF4799 at 103.796 kb on - strand, within GFF4799 at 103.804 kb on + strand, within GFF4799 at 103.804 kb on + strand, within GFF4799 at 103.805 kb on - strand, within GFF4799 at 103.837 kb on + strand, within GFF4799 at 103.882 kb on + strand, within GFF4799 at 103.886 kb on - strand, within GFF4799 at 103.919 kb on + strand, within GFF4799 at 103.976 kb on - strand, within GFF4799 at 104.153 kb on + strand at 104.154 kb on - strand at 104.176 kb on - strand at 104.182 kb on - strand at 104.494 kb on - strand, within GFF4800 at 104.572 kb on - strand, within GFF4800 at 104.727 kb on - strand, within GFF4800 at 104.812 kb on + strand, within GFF4800 at 104.813 kb on - strand, within GFF4800 at 104.816 kb on + strand, within GFF4800 at 104.865 kb on + strand, within GFF4800 at 104.865 kb on + strand, within GFF4800 at 104.865 kb on + strand, within GFF4800 at 104.904 kb on - strand, within GFF4800 at 104.982 kb on + strand, within GFF4800 at 104.983 kb on - strand, within GFF4800 at 105.025 kb on + strand at 105.083 kb on - strand at 105.125 kb on + strand at 105.136 kb on - strand at 105.178 kb on + strand at 105.317 kb on + strand at 105.321 kb on + strand at 105.434 kb on + strand at 105.563 kb on + strand, within GFF4801 at 105.575 kb on + strand, within GFF4801 at 105.581 kb on + strand, within GFF4801 at 105.582 kb on - strand, within GFF4801 at 105.689 kb on + strand, within GFF4801 at 105.694 kb on - strand, within GFF4801 at 105.762 kb on - strand, within GFF4801 at 105.814 kb on + strand, within GFF4801 at 105.872 kb on - strand, within GFF4801 at 105.872 kb on - strand, within GFF4801 at 105.974 kb on + strand, within GFF4801
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 103,232 + GFF4799 0.35 +0.0 103,411 - GFF4799 0.48 -0.6 103,443 - GFF4799 0.50 +0.3 103,454 + GFF4799 0.51 -0.0 103,455 - GFF4799 0.51 +1.5 103,460 + GFF4799 0.51 -0.3 103,706 - GFF4799 0.68 +0.3 103,711 + GFF4799 0.68 -0.5 103,796 - GFF4799 0.74 +0.2 103,804 + GFF4799 0.75 +0.7 103,804 + GFF4799 0.75 +0.4 103,805 - GFF4799 0.75 -0.6 103,837 + GFF4799 0.77 +0.2 103,882 + GFF4799 0.80 +0.5 103,886 - GFF4799 0.81 +0.0 103,919 + GFF4799 0.83 +0.1 103,976 - GFF4799 0.87 +0.0 104,153 + -0.4 104,154 - -0.3 104,176 - -0.4 104,182 - +0.5 104,494 - GFF4800 0.35 -0.2 104,572 - GFF4800 0.44 +0.8 104,727 - GFF4800 0.61 +0.3 104,812 + GFF4800 0.70 +0.2 104,813 - GFF4800 0.70 -0.2 104,816 + GFF4800 0.71 +0.0 104,865 + GFF4800 0.76 +0.3 104,865 + GFF4800 0.76 +0.5 104,865 + GFF4800 0.76 +0.2 104,904 - GFF4800 0.80 +0.3 104,982 + GFF4800 0.89 -0.6 104,983 - GFF4800 0.89 +0.9 105,025 + -0.5 105,083 - +0.6 105,125 + -0.3 105,136 - +1.3 105,178 + +0.1 105,317 + -0.3 105,321 + -0.0 105,434 + +0.1 105,563 + GFF4801 0.22 +0.7 105,575 + GFF4801 0.23 -0.4 105,581 + GFF4801 0.24 +0.1 105,582 - GFF4801 0.24 +0.5 105,689 + GFF4801 0.34 -0.3 105,694 - GFF4801 0.34 +0.7 105,762 - GFF4801 0.41 -0.2 105,814 + GFF4801 0.46 +0.3 105,872 - GFF4801 0.51 +0.0 105,872 - GFF4801 0.51 -0.2 105,974 + GFF4801 0.61 +0.1
Or see this region's nucleotide sequence