Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF473 and GFF474 are separated by 57 nucleotides GFF474 and GFF475 are separated by 582 nucleotides
GFF473 - Putative PQQ enzyme repeat, at 193,986 to 195,110
GFF473
GFF474 - Xanthine permease, at 195,168 to 196,493
GFF474
GFF475 - Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2), at 197,076 to 198,656
GFF475
Position (kb) 195
196
197 Strain fitness (log2 ratio) -1
0
1 at 194.211 kb on + strand, within GFF473 at 194.211 kb on + strand, within GFF473 at 194.280 kb on + strand, within GFF473 at 194.281 kb on - strand, within GFF473 at 194.325 kb on - strand, within GFF473 at 194.325 kb on - strand, within GFF473 at 194.328 kb on + strand, within GFF473 at 194.373 kb on + strand, within GFF473 at 194.374 kb on - strand, within GFF473 at 194.664 kb on - strand, within GFF473 at 194.838 kb on - strand, within GFF473 at 194.885 kb on + strand, within GFF473 at 194.924 kb on + strand, within GFF473 at 194.989 kb on - strand, within GFF473 at 194.989 kb on - strand, within GFF473 at 194.989 kb on - strand, within GFF473 at 194.990 kb on + strand, within GFF473 at 194.990 kb on + strand, within GFF473 at 195.029 kb on + strand at 195.029 kb on + strand at 195.079 kb on - strand at 195.112 kb on - strand at 195.154 kb on + strand at 195.154 kb on + strand at 195.163 kb on + strand at 195.163 kb on + strand at 195.163 kb on + strand at 195.164 kb on - strand at 195.208 kb on + strand at 195.227 kb on - strand at 195.273 kb on - strand at 195.309 kb on - strand, within GFF474 at 195.416 kb on + strand, within GFF474 at 195.417 kb on - strand, within GFF474 at 195.419 kb on + strand, within GFF474 at 195.592 kb on + strand, within GFF474 at 195.678 kb on - strand, within GFF474 at 195.698 kb on + strand, within GFF474 at 195.967 kb on + strand, within GFF474 at 196.064 kb on - strand, within GFF474 at 196.151 kb on - strand, within GFF474 at 196.265 kb on + strand, within GFF474 at 196.266 kb on - strand, within GFF474 at 196.290 kb on - strand, within GFF474 at 196.343 kb on + strand, within GFF474 at 196.344 kb on - strand, within GFF474 at 196.344 kb on - strand, within GFF474 at 196.451 kb on + strand at 196.575 kb on + strand at 196.578 kb on - strand at 196.640 kb on - strand at 196.831 kb on + strand at 196.867 kb on + strand at 197.026 kb on + strand at 197.027 kb on - strand at 197.054 kb on + strand at 197.145 kb on + strand at 197.205 kb on + strand at 197.205 kb on + strand at 197.205 kb on + strand at 197.206 kb on - strand at 197.225 kb on + strand at 197.226 kb on - strand at 197.230 kb on - strand at 197.297 kb on + strand, within GFF475 at 197.312 kb on + strand, within GFF475 at 197.333 kb on - strand, within GFF475 at 197.336 kb on + strand, within GFF475 at 197.336 kb on + strand, within GFF475 at 197.448 kb on - strand, within GFF475 at 197.448 kb on - strand, within GFF475 at 197.466 kb on + strand, within GFF475 at 197.472 kb on + strand, within GFF475
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 194,211 + GFF473 0.20 +0.0 194,211 + GFF473 0.20 +0.1 194,280 + GFF473 0.26 +0.8 194,281 - GFF473 0.26 +0.6 194,325 - GFF473 0.30 +0.7 194,325 - GFF473 0.30 +0.2 194,328 + GFF473 0.30 +0.5 194,373 + GFF473 0.34 +0.1 194,374 - GFF473 0.34 +0.5 194,664 - GFF473 0.60 +0.1 194,838 - GFF473 0.76 +0.1 194,885 + GFF473 0.80 +0.4 194,924 + GFF473 0.83 -0.6 194,989 - GFF473 0.89 -0.4 194,989 - GFF473 0.89 -0.0 194,989 - GFF473 0.89 +0.4 194,990 + GFF473 0.89 +0.0 194,990 + GFF473 0.89 +0.3 195,029 + +0.3 195,029 + +0.6 195,079 - +0.1 195,112 - -0.1 195,154 + -0.3 195,154 + -0.0 195,163 + +0.3 195,163 + +0.1 195,163 + -0.4 195,164 - -1.7 195,208 + -0.1 195,227 - +1.0 195,273 - -0.9 195,309 - GFF474 0.11 -0.4 195,416 + GFF474 0.19 +0.1 195,417 - GFF474 0.19 +0.4 195,419 + GFF474 0.19 +0.1 195,592 + GFF474 0.32 +0.0 195,678 - GFF474 0.38 +0.2 195,698 + GFF474 0.40 +1.4 195,967 + GFF474 0.60 +0.8 196,064 - GFF474 0.68 +0.4 196,151 - GFF474 0.74 -0.3 196,265 + GFF474 0.83 -0.4 196,266 - GFF474 0.83 +0.1 196,290 - GFF474 0.85 -0.1 196,343 + GFF474 0.89 +0.1 196,344 - GFF474 0.89 +1.1 196,344 - GFF474 0.89 +0.4 196,451 + +0.1 196,575 + -0.2 196,578 - +0.1 196,640 - +0.3 196,831 + -0.2 196,867 + -0.5 197,026 + +0.5 197,027 - +0.2 197,054 + -0.3 197,145 + +0.4 197,205 + -0.1 197,205 + -0.1 197,205 + +0.1 197,206 - +0.2 197,225 + +0.4 197,226 - -0.1 197,230 - +0.3 197,297 + GFF475 0.14 -0.2 197,312 + GFF475 0.15 +1.2 197,333 - GFF475 0.16 -0.1 197,336 + GFF475 0.16 +0.3 197,336 + GFF475 0.16 -0.6 197,448 - GFF475 0.24 +0.7 197,448 - GFF475 0.24 +0.3 197,466 + GFF475 0.25 +0.5 197,472 + GFF475 0.25 +0.6
Or see this region's nucleotide sequence