Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4691 and GFF4692 are separated by 235 nucleotides GFF4692 and GFF4693 are separated by 116 nucleotides GFF4693 and GFF4694 are separated by 84 nucleotides
GFF4691 - Alanyl-tRNA synthetase (EC 6.1.1.7), at 1,151 to 3,781
GFF4691
GFF4692 - Regulatory protein RecX, at 4,017 to 4,517
GFF4692
GFF4693 - RecA protein, at 4,634 to 5,695
GFF4693
GFF4694 - C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS, at 5,780 to 6,277
GFF4694
Position (kb) 4
5
6 Strain fitness (log2 ratio) -1
0
1 at 3.904 kb on - strand at 4.039 kb on - strand at 4.039 kb on - strand at 4.132 kb on + strand, within GFF4692 at 4.315 kb on + strand, within GFF4692 at 4.316 kb on - strand, within GFF4692 at 4.316 kb on - strand, within GFF4692 at 4.457 kb on + strand, within GFF4692 at 4.457 kb on + strand, within GFF4692 at 4.458 kb on - strand, within GFF4692 at 4.461 kb on + strand, within GFF4692 at 4.556 kb on + strand at 4.557 kb on - strand at 5.823 kb on + strand at 5.972 kb on - strand, within GFF4694 at 6.032 kb on + strand, within GFF4694 at 6.107 kb on - strand, within GFF4694 at 6.107 kb on - strand, within GFF4694 at 6.110 kb on - strand, within GFF4694 at 6.110 kb on - strand, within GFF4694 at 6.110 kb on - strand, within GFF4694 at 6.110 kb on - strand, within GFF4694 at 6.112 kb on - strand, within GFF4694 at 6.112 kb on - strand, within GFF4694 at 6.356 kb on - strand at 6.393 kb on - strand at 6.410 kb on + strand at 6.527 kb on + strand at 6.555 kb on - strand at 6.555 kb on - strand at 6.654 kb on + strand at 6.655 kb on - strand at 6.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 3,904 - -0.3 4,039 - -0.1 4,039 - +0.0 4,132 + GFF4692 0.23 -0.8 4,315 + GFF4692 0.59 -1.6 4,316 - GFF4692 0.60 +0.1 4,316 - GFF4692 0.60 -0.5 4,457 + GFF4692 0.88 -1.1 4,457 + GFF4692 0.88 -0.0 4,458 - GFF4692 0.88 -0.0 4,461 + GFF4692 0.89 +0.3 4,556 + +0.4 4,557 - +0.2 5,823 + -0.2 5,972 - GFF4694 0.39 -1.0 6,032 + GFF4694 0.51 -0.2 6,107 - GFF4694 0.66 +0.4 6,107 - GFF4694 0.66 +0.4 6,110 - GFF4694 0.66 +0.4 6,110 - GFF4694 0.66 -0.4 6,110 - GFF4694 0.66 -0.2 6,110 - GFF4694 0.66 +0.4 6,112 - GFF4694 0.67 -0.7 6,112 - GFF4694 0.67 -0.5 6,356 - -1.4 6,393 - -0.4 6,410 + +0.2 6,527 + -0.3 6,555 - -0.1 6,555 - +0.6 6,654 + -0.4 6,655 - +0.0 6,655 - -0.0
Or see this region's nucleotide sequence