Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4654 and GFF4655 are separated by 34 nucleotides GFF4655 and GFF4656 are separated by 9 nucleotides
GFF4654 - tolB protein precursor, periplasmic protein involved in the tonb-independent uptake of group A colicins, at 446,640 to 447,935
GFF4654
GFF4655 - 18K peptidoglycan-associated outer membrane lipoprotein; Peptidoglycan-associated lipoprotein precursor; Outer membrane protein P6; OmpA/MotB precursor, at 447,970 to 448,494
GFF4655
GFF4656 - TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain, at 448,504 to 449,292
GFF4656
Position (kb) 447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 447.026 kb on - strand, within GFF4654 at 447.147 kb on + strand, within GFF4654 at 447.148 kb on - strand, within GFF4654 at 447.211 kb on - strand, within GFF4654 at 447.289 kb on - strand, within GFF4654 at 447.453 kb on + strand, within GFF4654 at 447.454 kb on - strand, within GFF4654 at 447.554 kb on + strand, within GFF4654 at 447.554 kb on + strand, within GFF4654 at 447.623 kb on + strand, within GFF4654 at 447.623 kb on + strand, within GFF4654 at 447.671 kb on + strand, within GFF4654 at 447.794 kb on + strand, within GFF4654 at 447.814 kb on - strand at 447.814 kb on - strand at 448.102 kb on - strand, within GFF4655 at 448.205 kb on - strand, within GFF4655 at 448.248 kb on + strand, within GFF4655 at 448.249 kb on - strand, within GFF4655 at 448.260 kb on + strand, within GFF4655 at 448.489 kb on + strand at 448.785 kb on + strand, within GFF4656 at 448.809 kb on + strand, within GFF4656 at 448.936 kb on + strand, within GFF4656 at 449.071 kb on + strand, within GFF4656 at 449.072 kb on - strand, within GFF4656 at 449.104 kb on + strand, within GFF4656 at 449.161 kb on + strand, within GFF4656 at 449.162 kb on - strand, within GFF4656 at 449.218 kb on + strand at 449.240 kb on - strand at 449.297 kb on + strand at 449.406 kb on + strand at 449.430 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 447,026 - GFF4654 0.30 -2.5 447,147 + GFF4654 0.39 -2.7 447,148 - GFF4654 0.39 -0.8 447,211 - GFF4654 0.44 -2.1 447,289 - GFF4654 0.50 -2.7 447,453 + GFF4654 0.63 -3.3 447,454 - GFF4654 0.63 -1.4 447,554 + GFF4654 0.71 -1.1 447,554 + GFF4654 0.71 -3.3 447,623 + GFF4654 0.76 -2.8 447,623 + GFF4654 0.76 -2.1 447,671 + GFF4654 0.80 -1.7 447,794 + GFF4654 0.89 -3.3 447,814 - -1.6 447,814 - -2.5 448,102 - GFF4655 0.25 -2.6 448,205 - GFF4655 0.45 -2.9 448,248 + GFF4655 0.53 -1.8 448,249 - GFF4655 0.53 -1.8 448,260 + GFF4655 0.55 -3.0 448,489 + -2.0 448,785 + GFF4656 0.36 +0.6 448,809 + GFF4656 0.39 -0.4 448,936 + GFF4656 0.55 -0.1 449,071 + GFF4656 0.72 +0.4 449,072 - GFF4656 0.72 +0.2 449,104 + GFF4656 0.76 -0.4 449,161 + GFF4656 0.83 -1.3 449,162 - GFF4656 0.83 -0.5 449,218 + +0.2 449,240 - -0.4 449,297 + -0.0 449,406 + -0.9 449,430 + -1.0
Or see this region's nucleotide sequence