Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4604 and GFF4605 are separated by 397 nucleotides GFF4605 and GFF4606 are separated by 250 nucleotides GFF4606 and GFF4607 overlap by 4 nucleotides
GFF4604 - Ornithine decarboxylase (EC 4.1.1.17), at 393,923 to 396,121
GFF4604
GFF4605 - hypothetical protein, at 396,519 to 396,632
GFF4605
GFF4606 - sensor histidine kinase, at 396,883 to 397,560
GFF4606
GFF4607 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 397,557 to 400,169
GFF4607
Position (kb) 396
397
398 Strain fitness (log2 ratio) -1
0
1 at 396.456 kb on - strand at 396.554 kb on + strand, within GFF4605 at 396.922 kb on - strand at 396.977 kb on + strand, within GFF4606 at 396.977 kb on + strand, within GFF4606 at 396.978 kb on - strand, within GFF4606 at 397.030 kb on + strand, within GFF4606 at 397.065 kb on + strand, within GFF4606 at 397.065 kb on + strand, within GFF4606 at 397.268 kb on + strand, within GFF4606 at 397.448 kb on - strand, within GFF4606 at 397.459 kb on + strand, within GFF4606 at 397.476 kb on - strand, within GFF4606 at 397.643 kb on + strand at 397.675 kb on - strand at 397.872 kb on - strand, within GFF4607 at 397.911 kb on + strand, within GFF4607 at 397.974 kb on + strand, within GFF4607 at 398.063 kb on + strand, within GFF4607 at 398.376 kb on + strand, within GFF4607 at 398.377 kb on - strand, within GFF4607 at 398.377 kb on - strand, within GFF4607 at 398.391 kb on - strand, within GFF4607 at 398.417 kb on - strand, within GFF4607
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 396,456 - +1.2 396,554 + GFF4605 0.31 -0.5 396,922 - -0.8 396,977 + GFF4606 0.14 +1.0 396,977 + GFF4606 0.14 -1.1 396,978 - GFF4606 0.14 +0.2 397,030 + GFF4606 0.22 +0.2 397,065 + GFF4606 0.27 +0.7 397,065 + GFF4606 0.27 +0.1 397,268 + GFF4606 0.57 +0.1 397,448 - GFF4606 0.83 +1.1 397,459 + GFF4606 0.85 -0.5 397,476 - GFF4606 0.87 +0.1 397,643 + -0.1 397,675 - -0.2 397,872 - GFF4607 0.12 -0.0 397,911 + GFF4607 0.14 -0.0 397,974 + GFF4607 0.16 +0.5 398,063 + GFF4607 0.19 +0.1 398,376 + GFF4607 0.31 -0.1 398,377 - GFF4607 0.31 -1.1 398,377 - GFF4607 0.31 +0.9 398,391 - GFF4607 0.32 +1.0 398,417 - GFF4607 0.33 -1.4
Or see this region's nucleotide sequence