Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4589

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4588 and GFF4589 are separated by 35 nucleotidesGFF4589 and GFF4590 are separated by 296 nucleotides GFF4588 - Glutaminyl-tRNA synthetase (EC 6.1.1.18), at 377,965 to 379,632 GFF4588 GFF4589 - hypothetical protein, at 379,668 to 379,781 GFF4589 GFF4590 - N-acetylglucosamine-regulated outer membrane porin, at 380,078 to 381,484 GFF4590 Position (kb) 379 380Strain fitness (log2 ratio) -1 0 1at 379.609 kb on - strandat 379.930 kb on + strandat 380.072 kb on + strandat 380.072 kb on + strandat 380.073 kb on - strandat 380.101 kb on + strandat 380.104 kb on + strandat 380.213 kb on + strandat 380.272 kb on + strand, within GFF4590at 380.501 kb on + strand, within GFF4590at 380.588 kb on + strand, within GFF4590at 380.588 kb on + strand, within GFF4590at 380.735 kb on + strand, within GFF4590

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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379,609 - -0.6
379,930 + -1.0
380,072 + +0.3
380,072 + -0.5
380,073 - +0.4
380,101 + +0.1
380,104 + -0.4
380,213 + +0.0
380,272 + GFF4590 0.14 +0.0
380,501 + GFF4590 0.30 -0.7
380,588 + GFF4590 0.36 +0.2
380,588 + GFF4590 0.36 -0.2
380,735 + GFF4590 0.47 +0.2

Or see this region's nucleotide sequence