Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4516 and GFF4517 overlap by 4 nucleotides GFF4517 and GFF4518 overlap by 1 nucleotides GFF4518 and GFF4519 are separated by 67 nucleotides GFF4519 and GFF4520 are separated by 21 nucleotides GFF4520 and GFF4521 are separated by 84 nucleotides
GFF4516 - Putative oxidoreductase STM0611-0613, chain A, at 304,149 to 306,197
GFF4516
GFF4517 - Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), at 306,194 to 306,751
GFF4517
GFF4518 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 306,751 to 307,518
GFF4518
GFF4519 - Universal stress protein G, at 307,586 to 307,879
GFF4519
GFF4520 - FIG01045303: hypothetical protein, at 307,901 to 308,152
GFF4520
GFF4521 - Uncharacterized zinc-type alcohol dehydrogenase-like protein ybdR, at 308,237 to 309,475
GFF4521
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.908 kb on - strand, within GFF4516 at 306.040 kb on - strand at 306.040 kb on - strand at 306.066 kb on + strand at 306.141 kb on - strand at 306.223 kb on + strand at 306.326 kb on + strand, within GFF4517 at 306.326 kb on + strand, within GFF4517 at 306.327 kb on - strand, within GFF4517 at 306.327 kb on - strand, within GFF4517 at 306.445 kb on + strand, within GFF4517 at 306.485 kb on - strand, within GFF4517 at 306.511 kb on + strand, within GFF4517 at 306.512 kb on - strand, within GFF4517 at 306.544 kb on + strand, within GFF4517 at 306.544 kb on + strand, within GFF4517 at 306.682 kb on + strand, within GFF4517 at 306.712 kb on + strand at 306.791 kb on + strand at 306.868 kb on + strand, within GFF4518 at 306.868 kb on + strand, within GFF4518 at 306.906 kb on + strand, within GFF4518 at 306.946 kb on + strand, within GFF4518 at 306.947 kb on - strand, within GFF4518 at 306.947 kb on - strand, within GFF4518 at 306.980 kb on + strand, within GFF4518 at 307.261 kb on - strand, within GFF4518 at 307.352 kb on - strand, within GFF4518 at 307.491 kb on + strand at 307.574 kb on + strand at 307.588 kb on - strand at 307.673 kb on - strand, within GFF4519 at 307.763 kb on - strand, within GFF4519 at 307.898 kb on + strand at 308.011 kb on - strand, within GFF4520 at 308.011 kb on - strand, within GFF4520 at 308.189 kb on + strand at 308.200 kb on - strand at 308.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 305,908 - GFF4516 0.86 -1.1 306,040 - +0.7 306,040 - -0.4 306,066 + -0.1 306,141 - -1.1 306,223 + -1.6 306,326 + GFF4517 0.24 +0.5 306,326 + GFF4517 0.24 -0.3 306,327 - GFF4517 0.24 +0.5 306,327 - GFF4517 0.24 +0.5 306,445 + GFF4517 0.45 +0.5 306,485 - GFF4517 0.52 +0.0 306,511 + GFF4517 0.57 +0.7 306,512 - GFF4517 0.57 +0.7 306,544 + GFF4517 0.63 -0.0 306,544 + GFF4517 0.63 +0.0 306,682 + GFF4517 0.87 +0.9 306,712 + +0.2 306,791 + +0.7 306,868 + GFF4518 0.15 -0.2 306,868 + GFF4518 0.15 -0.2 306,906 + GFF4518 0.20 +0.1 306,946 + GFF4518 0.25 +0.2 306,947 - GFF4518 0.26 -0.2 306,947 - GFF4518 0.26 -0.1 306,980 + GFF4518 0.30 +0.3 307,261 - GFF4518 0.66 -0.5 307,352 - GFF4518 0.78 -0.9 307,491 + -0.3 307,574 + -0.0 307,588 - +0.0 307,673 - GFF4519 0.30 +0.3 307,763 - GFF4519 0.60 +0.1 307,898 + -0.0 308,011 - GFF4520 0.44 -0.0 308,011 - GFF4520 0.44 -0.0 308,189 + -1.9 308,200 - +0.1 308,253 - -0.2
Or see this region's nucleotide sequence