Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4515 and GFF4516 are separated by 223 nucleotides GFF4516 and GFF4517 overlap by 4 nucleotides GFF4517 and GFF4518 overlap by 1 nucleotides
GFF4515 - Putative oxidoreductase component of anaerobic dehydrogenases; Chaperone protein TorD, at 303,365 to 303,925
GFF4515
GFF4516 - Putative oxidoreductase STM0611-0613, chain A, at 304,149 to 306,197
GFF4516
GFF4517 - Anaerobic dimethyl sulfoxide reductase chain B (EC 1.8.5.3), at 306,194 to 306,751
GFF4517
GFF4518 - Anaerobic dimethyl sulfoxide reductase chain C (EC 1.8.5.3), at 306,751 to 307,518
GFF4518
Position (kb) 304
305
306
307 Strain fitness (log2 ratio) -1
0
1 at 303.880 kb on - strand at 304.077 kb on - strand at 304.143 kb on - strand at 304.176 kb on - strand at 304.241 kb on + strand at 304.242 kb on - strand at 304.359 kb on - strand, within GFF4516 at 304.383 kb on + strand, within GFF4516 at 304.411 kb on - strand, within GFF4516 at 304.411 kb on - strand, within GFF4516 at 304.444 kb on - strand, within GFF4516 at 304.446 kb on - strand, within GFF4516 at 304.501 kb on - strand, within GFF4516 at 304.539 kb on - strand, within GFF4516 at 304.562 kb on + strand, within GFF4516 at 304.608 kb on + strand, within GFF4516 at 304.692 kb on + strand, within GFF4516 at 304.758 kb on - strand, within GFF4516 at 304.821 kb on + strand, within GFF4516 at 305.057 kb on + strand, within GFF4516 at 305.073 kb on + strand, within GFF4516 at 305.073 kb on + strand, within GFF4516 at 305.075 kb on + strand, within GFF4516 at 305.268 kb on - strand, within GFF4516 at 305.482 kb on - strand, within GFF4516 at 305.535 kb on - strand, within GFF4516 at 305.535 kb on - strand, within GFF4516 at 305.731 kb on - strand, within GFF4516 at 305.908 kb on - strand, within GFF4516 at 306.040 kb on - strand at 306.040 kb on - strand at 306.066 kb on + strand at 306.141 kb on - strand at 306.223 kb on + strand at 306.326 kb on + strand, within GFF4517 at 306.326 kb on + strand, within GFF4517 at 306.327 kb on - strand, within GFF4517 at 306.327 kb on - strand, within GFF4517 at 306.445 kb on + strand, within GFF4517 at 306.485 kb on - strand, within GFF4517 at 306.511 kb on + strand, within GFF4517 at 306.512 kb on - strand, within GFF4517 at 306.544 kb on + strand, within GFF4517 at 306.544 kb on + strand, within GFF4517 at 306.682 kb on + strand, within GFF4517 at 306.712 kb on + strand at 306.791 kb on + strand at 306.868 kb on + strand, within GFF4518 at 306.868 kb on + strand, within GFF4518 at 306.906 kb on + strand, within GFF4518 at 306.946 kb on + strand, within GFF4518 at 306.947 kb on - strand, within GFF4518 at 306.947 kb on - strand, within GFF4518 at 306.980 kb on + strand, within GFF4518
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 303,880 - +0.2 304,077 - +0.3 304,143 - +1.5 304,176 - -0.2 304,241 + -0.3 304,242 - -0.0 304,359 - GFF4516 0.10 +0.2 304,383 + GFF4516 0.11 +0.2 304,411 - GFF4516 0.13 -0.3 304,411 - GFF4516 0.13 +0.4 304,444 - GFF4516 0.14 -0.4 304,446 - GFF4516 0.14 -0.0 304,501 - GFF4516 0.17 -0.1 304,539 - GFF4516 0.19 +1.5 304,562 + GFF4516 0.20 +0.4 304,608 + GFF4516 0.22 -0.0 304,692 + GFF4516 0.27 +0.6 304,758 - GFF4516 0.30 +0.2 304,821 + GFF4516 0.33 -0.2 305,057 + GFF4516 0.44 -0.2 305,073 + GFF4516 0.45 -1.3 305,073 + GFF4516 0.45 +0.1 305,075 + GFF4516 0.45 -0.3 305,268 - GFF4516 0.55 +1.3 305,482 - GFF4516 0.65 -0.0 305,535 - GFF4516 0.68 +0.1 305,535 - GFF4516 0.68 +0.3 305,731 - GFF4516 0.77 -0.6 305,908 - GFF4516 0.86 -1.1 306,040 - +0.7 306,040 - -0.4 306,066 + -0.1 306,141 - -1.1 306,223 + -1.6 306,326 + GFF4517 0.24 +0.5 306,326 + GFF4517 0.24 -0.3 306,327 - GFF4517 0.24 +0.5 306,327 - GFF4517 0.24 +0.5 306,445 + GFF4517 0.45 +0.5 306,485 - GFF4517 0.52 +0.0 306,511 + GFF4517 0.57 +0.7 306,512 - GFF4517 0.57 +0.7 306,544 + GFF4517 0.63 -0.0 306,544 + GFF4517 0.63 +0.0 306,682 + GFF4517 0.87 +0.9 306,712 + +0.2 306,791 + +0.7 306,868 + GFF4518 0.15 -0.2 306,868 + GFF4518 0.15 -0.2 306,906 + GFF4518 0.20 +0.1 306,946 + GFF4518 0.25 +0.2 306,947 - GFF4518 0.26 -0.2 306,947 - GFF4518 0.26 -0.1 306,980 + GFF4518 0.30 +0.3
Or see this region's nucleotide sequence