Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4484 and GFF4485 are separated by 288 nucleotides GFF4485 and GFF4486 are separated by 5 nucleotides GFF4486 and GFF4487 are separated by 90 nucleotides
GFF4484 - Transcriptional regulator, TetR family, at 268,360 to 268,941
GFF4484
GFF4485 - Transcriptional activator RamA, at 269,230 to 269,571
GFF4485
GFF4486 - Putative inner membrane protein, at 269,577 to 269,801
GFF4486
GFF4487 - FIG00638355: hypothetical protein, at 269,892 to 271,010
GFF4487
Position (kb) 269
270 Strain fitness (log2 ratio) -1
0
1 at 268.668 kb on - strand, within GFF4484 at 268.767 kb on - strand, within GFF4484 at 269.040 kb on - strand at 269.101 kb on + strand at 269.157 kb on - strand at 269.166 kb on - strand at 269.281 kb on - strand, within GFF4485 at 269.298 kb on - strand, within GFF4485 at 269.311 kb on - strand, within GFF4485 at 269.358 kb on + strand, within GFF4485 at 269.365 kb on + strand, within GFF4485 at 269.366 kb on - strand, within GFF4485 at 269.408 kb on + strand, within GFF4485 at 269.409 kb on - strand, within GFF4485 at 269.457 kb on + strand, within GFF4485 at 269.457 kb on + strand, within GFF4485 at 269.884 kb on + strand at 269.884 kb on + strand at 269.885 kb on - strand at 269.934 kb on + strand at 269.972 kb on - strand at 270.080 kb on + strand, within GFF4487 at 270.081 kb on - strand, within GFF4487 at 270.081 kb on - strand, within GFF4487 at 270.112 kb on + strand, within GFF4487 at 270.171 kb on - strand, within GFF4487 at 270.255 kb on - strand, within GFF4487 at 270.303 kb on + strand, within GFF4487 at 270.373 kb on + strand, within GFF4487 at 270.501 kb on - strand, within GFF4487 at 270.502 kb on + strand, within GFF4487 at 270.527 kb on + strand, within GFF4487 at 270.634 kb on - strand, within GFF4487 at 270.634 kb on - strand, within GFF4487 at 270.637 kb on + strand, within GFF4487 at 270.674 kb on + strand, within GFF4487 at 270.777 kb on - strand, within GFF4487
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 268,668 - GFF4484 0.53 -0.1 268,767 - GFF4484 0.70 -0.5 269,040 - +0.2 269,101 + -0.2 269,157 - -0.0 269,166 - +0.1 269,281 - GFF4485 0.15 +1.0 269,298 - GFF4485 0.20 +0.0 269,311 - GFF4485 0.24 +0.2 269,358 + GFF4485 0.37 +0.1 269,365 + GFF4485 0.39 +0.6 269,366 - GFF4485 0.40 +0.4 269,408 + GFF4485 0.52 +0.0 269,409 - GFF4485 0.52 +0.3 269,457 + GFF4485 0.66 +0.3 269,457 + GFF4485 0.66 +0.1 269,884 + +0.1 269,884 + -0.0 269,885 - -0.2 269,934 + +0.2 269,972 - +0.2 270,080 + GFF4487 0.17 +0.4 270,081 - GFF4487 0.17 -0.4 270,081 - GFF4487 0.17 -1.2 270,112 + GFF4487 0.20 +0.7 270,171 - GFF4487 0.25 +1.7 270,255 - GFF4487 0.32 +0.3 270,303 + GFF4487 0.37 +0.2 270,373 + GFF4487 0.43 -1.6 270,501 - GFF4487 0.54 -0.1 270,502 + GFF4487 0.55 -0.6 270,527 + GFF4487 0.57 +0.6 270,634 - GFF4487 0.66 +0.2 270,634 - GFF4487 0.66 +0.1 270,637 + GFF4487 0.67 -0.0 270,674 + GFF4487 0.70 -0.0 270,777 - GFF4487 0.79 +0.2
Or see this region's nucleotide sequence