Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4478 and GFF4479 are separated by 2 nucleotides GFF4479 and GFF4480 are separated by 14 nucleotides GFF4480 and GFF4481 overlap by 23 nucleotides GFF4481 and GFF4482 are separated by 199 nucleotides
GFF4478 - PTS system, mannose-specific IID component (EC 2.7.1.69), at 264,530 to 265,384
GFF4478
GFF4479 - PTS system, mannose-specific IIC component (EC 2.7.1.69), at 265,387 to 266,130
GFF4479
GFF4480 - PTS system, mannose-specific IIB component (EC 2.7.1.69), at 266,145 to 266,615
GFF4480
GFF4481 - PTS system, mannose-specific IIA component (EC 2.7.1.69), at 266,593 to 267,042
GFF4481
GFF4482 - Oxygen-insensitive NAD(P)H nitroreductase (EC 1.-.-.-) / Dihydropteridine reductase (EC 1.5.1.34), at 267,242 to 267,895
GFF4482
Position (kb) 266
267 Strain fitness (log2 ratio) -1
0
1 at 265.258 kb on - strand, within GFF4478 at 265.280 kb on - strand, within GFF4478 at 265.480 kb on - strand, within GFF4479 at 265.511 kb on + strand, within GFF4479 at 265.511 kb on + strand, within GFF4479 at 265.512 kb on - strand, within GFF4479 at 265.512 kb on - strand, within GFF4479 at 265.530 kb on + strand, within GFF4479 at 265.531 kb on - strand, within GFF4479 at 265.603 kb on - strand, within GFF4479 at 265.603 kb on - strand, within GFF4479 at 265.743 kb on + strand, within GFF4479 at 265.827 kb on + strand, within GFF4479 at 265.834 kb on - strand, within GFF4479 at 265.879 kb on - strand, within GFF4479 at 266.130 kb on + strand at 266.154 kb on - strand at 266.159 kb on + strand at 266.257 kb on + strand, within GFF4480 at 266.258 kb on - strand, within GFF4480 at 266.260 kb on - strand, within GFF4480 at 266.363 kb on + strand, within GFF4480 at 266.478 kb on + strand, within GFF4480 at 266.479 kb on - strand, within GFF4480 at 266.487 kb on - strand, within GFF4480 at 266.604 kb on + strand at 266.630 kb on - strand at 266.653 kb on + strand, within GFF4481 at 266.700 kb on - strand, within GFF4481 at 266.936 kb on + strand, within GFF4481 at 266.991 kb on + strand, within GFF4481 at 267.030 kb on - strand at 267.030 kb on - strand at 267.146 kb on + strand at 267.349 kb on - strand, within GFF4482 at 267.466 kb on - strand, within GFF4482 at 267.556 kb on + strand, within GFF4482
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 265,258 - GFF4478 0.85 -0.2 265,280 - GFF4478 0.88 -0.3 265,480 - GFF4479 0.12 +0.3 265,511 + GFF4479 0.17 -0.0 265,511 + GFF4479 0.17 +0.3 265,512 - GFF4479 0.17 +0.5 265,512 - GFF4479 0.17 +0.1 265,530 + GFF4479 0.19 +0.0 265,531 - GFF4479 0.19 -0.6 265,603 - GFF4479 0.29 -0.2 265,603 - GFF4479 0.29 +0.7 265,743 + GFF4479 0.48 -0.1 265,827 + GFF4479 0.59 +0.3 265,834 - GFF4479 0.60 +0.2 265,879 - GFF4479 0.66 +0.3 266,130 + -0.0 266,154 - +0.4 266,159 + +0.0 266,257 + GFF4480 0.24 -0.2 266,258 - GFF4480 0.24 +0.2 266,260 - GFF4480 0.24 +0.7 266,363 + GFF4480 0.46 +0.3 266,478 + GFF4480 0.71 +1.0 266,479 - GFF4480 0.71 -0.1 266,487 - GFF4480 0.73 -0.0 266,604 + -0.1 266,630 - -1.5 266,653 + GFF4481 0.13 +0.9 266,700 - GFF4481 0.24 -0.1 266,936 + GFF4481 0.76 +0.2 266,991 + GFF4481 0.88 -0.2 267,030 - -0.1 267,030 - +0.5 267,146 + +0.1 267,349 - GFF4482 0.16 -0.2 267,466 - GFF4482 0.34 +0.7 267,556 + GFF4482 0.48 +0.4
Or see this region's nucleotide sequence