Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4245 and GFF4246 are separated by 16 nucleotides GFF4246 and GFF4247 overlap by 4 nucleotides
GFF4245 - RND efflux system, outer membrane lipoprotein CmeC, at 22,631 to 24,088
GFF4245
GFF4246 - RND efflux system, inner membrane transporter CmeB, at 24,105 to 27,272
GFF4246
GFF4247 - RND efflux system, membrane fusion protein CmeA, at 27,269 to 28,495
GFF4247
Position (kb) 24
25
26
27
28 Strain fitness (log2 ratio) -2
-1
0
1 at 23.220 kb on - strand, within GFF4245 at 23.258 kb on - strand, within GFF4245 at 23.460 kb on + strand, within GFF4245 at 23.460 kb on + strand, within GFF4245 at 23.461 kb on - strand, within GFF4245 at 23.577 kb on + strand, within GFF4245 at 23.578 kb on - strand, within GFF4245 at 23.578 kb on - strand, within GFF4245 at 23.578 kb on - strand, within GFF4245 at 23.598 kb on + strand, within GFF4245 at 23.599 kb on - strand, within GFF4245 at 23.837 kb on + strand, within GFF4245 at 23.837 kb on + strand, within GFF4245 at 23.837 kb on + strand, within GFF4245 at 23.838 kb on - strand, within GFF4245 at 23.838 kb on - strand, within GFF4245 at 23.879 kb on + strand, within GFF4245 at 23.962 kb on - strand at 24.089 kb on + strand at 24.106 kb on + strand at 24.106 kb on + strand at 24.280 kb on - strand at 24.289 kb on - strand at 24.292 kb on - strand at 24.292 kb on - strand at 24.473 kb on + strand, within GFF4246 at 24.474 kb on - strand, within GFF4246 at 24.528 kb on - strand, within GFF4246 at 24.528 kb on - strand, within GFF4246 at 24.572 kb on - strand, within GFF4246 at 24.775 kb on - strand, within GFF4246 at 24.793 kb on + strand, within GFF4246 at 24.976 kb on + strand, within GFF4246 at 25.069 kb on - strand, within GFF4246 at 25.140 kb on - strand, within GFF4246 at 25.205 kb on + strand, within GFF4246 at 25.389 kb on + strand, within GFF4246 at 25.535 kb on - strand, within GFF4246 at 25.537 kb on + strand, within GFF4246 at 25.537 kb on + strand, within GFF4246 at 25.538 kb on - strand, within GFF4246 at 25.542 kb on - strand, within GFF4246 at 25.612 kb on + strand, within GFF4246 at 25.612 kb on + strand, within GFF4246 at 25.613 kb on - strand, within GFF4246 at 25.937 kb on + strand, within GFF4246 at 26.057 kb on + strand, within GFF4246 at 26.057 kb on + strand, within GFF4246 at 26.058 kb on - strand, within GFF4246 at 26.058 kb on - strand, within GFF4246 at 26.240 kb on + strand, within GFF4246 at 26.427 kb on + strand, within GFF4246 at 26.439 kb on + strand, within GFF4246 at 26.441 kb on + strand, within GFF4246 at 26.443 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.628 kb on + strand, within GFF4246 at 26.801 kb on + strand, within GFF4246 at 26.810 kb on - strand, within GFF4246 at 27.036 kb on - strand at 27.036 kb on - strand at 27.037 kb on + strand at 27.484 kb on - strand, within GFF4247 at 27.519 kb on + strand, within GFF4247 at 27.705 kb on - strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.828 kb on + strand, within GFF4247 at 27.829 kb on - strand, within GFF4247 at 27.851 kb on - strand, within GFF4247 at 27.914 kb on + strand, within GFF4247 at 27.950 kb on - strand, within GFF4247 at 28.125 kb on - strand, within GFF4247 at 28.139 kb on + strand, within GFF4247 at 28.140 kb on - strand, within GFF4247
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 23,220 - GFF4245 0.40 -0.2 23,258 - GFF4245 0.43 +0.8 23,460 + GFF4245 0.57 -1.7 23,460 + GFF4245 0.57 -0.1 23,461 - GFF4245 0.57 +1.1 23,577 + GFF4245 0.65 +0.2 23,578 - GFF4245 0.65 +0.1 23,578 - GFF4245 0.65 +1.0 23,578 - GFF4245 0.65 +0.7 23,598 + GFF4245 0.66 -0.0 23,599 - GFF4245 0.66 +0.3 23,837 + GFF4245 0.83 +0.8 23,837 + GFF4245 0.83 +0.2 23,837 + GFF4245 0.83 -0.5 23,838 - GFF4245 0.83 -0.4 23,838 - GFF4245 0.83 +0.3 23,879 + GFF4245 0.86 +1.7 23,962 - -2.0 24,089 + +0.6 24,106 + +0.3 24,106 + +0.7 24,280 - +0.3 24,289 - +0.2 24,292 - +0.3 24,292 - -0.8 24,473 + GFF4246 0.12 +0.1 24,474 - GFF4246 0.12 -0.6 24,528 - GFF4246 0.13 +0.2 24,528 - GFF4246 0.13 -0.0 24,572 - GFF4246 0.15 +0.4 24,775 - GFF4246 0.21 +0.1 24,793 + GFF4246 0.22 -0.5 24,976 + GFF4246 0.27 +0.6 25,069 - GFF4246 0.30 +0.7 25,140 - GFF4246 0.33 -1.1 25,205 + GFF4246 0.35 -0.6 25,389 + GFF4246 0.41 +0.3 25,535 - GFF4246 0.45 +0.6 25,537 + GFF4246 0.45 +1.4 25,537 + GFF4246 0.45 +0.0 25,538 - GFF4246 0.45 +0.4 25,542 - GFF4246 0.45 -0.2 25,612 + GFF4246 0.48 +0.0 25,612 + GFF4246 0.48 +0.1 25,613 - GFF4246 0.48 -0.2 25,937 + GFF4246 0.58 +0.1 26,057 + GFF4246 0.62 +0.2 26,057 + GFF4246 0.62 +0.9 26,058 - GFF4246 0.62 +0.4 26,058 - GFF4246 0.62 -0.3 26,240 + GFF4246 0.67 +0.4 26,427 + GFF4246 0.73 +0.6 26,439 + GFF4246 0.74 -0.3 26,441 + GFF4246 0.74 -0.2 26,443 + GFF4246 0.74 +0.7 26,628 + GFF4246 0.80 +0.9 26,628 + GFF4246 0.80 -0.2 26,628 + GFF4246 0.80 +0.2 26,628 + GFF4246 0.80 +0.1 26,801 + GFF4246 0.85 -0.5 26,810 - GFF4246 0.85 +0.9 27,036 - +0.2 27,036 - +0.6 27,037 + -0.7 27,484 - GFF4247 0.18 -0.0 27,519 + GFF4247 0.20 +0.1 27,705 - GFF4247 0.36 +0.1 27,828 + GFF4247 0.46 -0.2 27,828 + GFF4247 0.46 +0.1 27,828 + GFF4247 0.46 +0.2 27,828 + GFF4247 0.46 +0.3 27,829 - GFF4247 0.46 +0.7 27,851 - GFF4247 0.47 +0.3 27,914 + GFF4247 0.53 -1.5 27,950 - GFF4247 0.56 +0.1 28,125 - GFF4247 0.70 -0.8 28,139 + GFF4247 0.71 +0.3 28,140 - GFF4247 0.71 +0.2
Or see this region's nucleotide sequence