Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4224 and GFF4225 are separated by 14 nucleotides GFF4225 and GFF4226 overlap by 1 nucleotides GFF4226 and GFF4227 are separated by 33 nucleotides
GFF4224 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 4,408 to 5,034
GFF4224
GFF4225 - Fumarylacetoacetate hydrolase family protein, at 5,049 to 5,927
GFF4225
GFF4226 - Putative hydrolase or acyltransferase, at 5,927 to 6,841
GFF4226
GFF4227 - Putative LysR family transcriptional regulator, at 6,875 to 7,840
GFF4227
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4.952 kb on - strand, within GFF4224 at 4.987 kb on + strand at 5.096 kb on + strand at 5.146 kb on - strand, within GFF4225 at 5.198 kb on - strand, within GFF4225 at 5.482 kb on + strand, within GFF4225 at 5.487 kb on + strand, within GFF4225 at 5.508 kb on + strand, within GFF4225 at 5.509 kb on - strand, within GFF4225 at 5.511 kb on - strand, within GFF4225 at 5.541 kb on - strand, within GFF4225 at 5.633 kb on - strand, within GFF4225 at 5.688 kb on - strand, within GFF4225 at 5.718 kb on + strand, within GFF4225 at 5.719 kb on - strand, within GFF4225 at 5.719 kb on - strand, within GFF4225 at 5.720 kb on + strand, within GFF4225 at 5.720 kb on + strand, within GFF4225 at 5.721 kb on - strand, within GFF4225 at 5.722 kb on + strand, within GFF4225 at 5.722 kb on + strand, within GFF4225 at 5.722 kb on + strand, within GFF4225 at 5.732 kb on + strand, within GFF4225 at 5.932 kb on + strand at 6.369 kb on - strand, within GFF4226 at 6.487 kb on + strand, within GFF4226 at 6.694 kb on - strand, within GFF4226 at 6.702 kb on + strand, within GFF4226 at 6.702 kb on + strand, within GFF4226 at 6.705 kb on - strand, within GFF4226 at 6.705 kb on - strand, within GFF4226 at 6.705 kb on - strand, within GFF4226 at 6.706 kb on + strand, within GFF4226 at 6.706 kb on + strand, within GFF4226 at 6.798 kb on - strand at 6.839 kb on + strand at 6.840 kb on - strand at 7.006 kb on - strand, within GFF4227 at 7.201 kb on + strand, within GFF4227 at 7.201 kb on + strand, within GFF4227 at 7.238 kb on + strand, within GFF4227 at 7.238 kb on + strand, within GFF4227 at 7.239 kb on - strand, within GFF4227 at 7.283 kb on - strand, within GFF4227 at 7.534 kb on - strand, within GFF4227 at 7.606 kb on + strand, within GFF4227 at 7.665 kb on - strand, within GFF4227 at 7.666 kb on + strand, within GFF4227 at 7.732 kb on - strand, within GFF4227 at 7.834 kb on - strand at 7.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 4,952 - GFF4224 0.87 -1.0 4,987 + +0.2 5,096 + -0.1 5,146 - GFF4225 0.11 -0.4 5,198 - GFF4225 0.17 +0.2 5,482 + GFF4225 0.49 +0.0 5,487 + GFF4225 0.50 +0.1 5,508 + GFF4225 0.52 +0.5 5,509 - GFF4225 0.52 +0.7 5,511 - GFF4225 0.53 +0.1 5,541 - GFF4225 0.56 +0.8 5,633 - GFF4225 0.66 +0.1 5,688 - GFF4225 0.73 +0.1 5,718 + GFF4225 0.76 +0.2 5,719 - GFF4225 0.76 -0.2 5,719 - GFF4225 0.76 +0.2 5,720 + GFF4225 0.76 +0.0 5,720 + GFF4225 0.76 -0.8 5,721 - GFF4225 0.76 +0.1 5,722 + GFF4225 0.77 +0.1 5,722 + GFF4225 0.77 +1.0 5,722 + GFF4225 0.77 -0.4 5,732 + GFF4225 0.78 +0.5 5,932 + +0.5 6,369 - GFF4226 0.48 +0.1 6,487 + GFF4226 0.61 +0.1 6,694 - GFF4226 0.84 -0.2 6,702 + GFF4226 0.85 +0.3 6,702 + GFF4226 0.85 +0.3 6,705 - GFF4226 0.85 +0.4 6,705 - GFF4226 0.85 +0.7 6,705 - GFF4226 0.85 -3.3 6,706 + GFF4226 0.85 +0.5 6,706 + GFF4226 0.85 +0.7 6,798 - +0.1 6,839 + -0.2 6,840 - -0.2 7,006 - GFF4227 0.14 -0.0 7,201 + GFF4227 0.34 +0.5 7,201 + GFF4227 0.34 -0.3 7,238 + GFF4227 0.38 +0.4 7,238 + GFF4227 0.38 -0.5 7,239 - GFF4227 0.38 +0.3 7,283 - GFF4227 0.42 +0.0 7,534 - GFF4227 0.68 -0.6 7,606 + GFF4227 0.76 -0.7 7,665 - GFF4227 0.82 +0.3 7,666 + GFF4227 0.82 -0.1 7,732 - GFF4227 0.89 +0.2 7,834 - +0.8 7,834 - -2.6
Or see this region's nucleotide sequence