Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4154 and GFF4155 overlap by 4 nucleotides GFF4155 and GFF4156 are separated by 64 nucleotides
GFF4154 - Type I secretion system ATPase, LssB family LapB, at 34,792 to 36,972
GFF4154
GFF4155 - Type I secretion system, outer membrane component LapE, at 36,969 to 38,378
GFF4155
GFF4156 - T1SS secreted agglutinin RTX, at 38,443 to 49,917
GFF4156
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -1
0
1 at 36.087 kb on + strand, within GFF4154 at 36.088 kb on - strand, within GFF4154 at 36.138 kb on + strand, within GFF4154 at 36.139 kb on - strand, within GFF4154 at 36.205 kb on - strand, within GFF4154 at 36.364 kb on - strand, within GFF4154 at 36.369 kb on - strand, within GFF4154 at 36.466 kb on + strand, within GFF4154 at 36.470 kb on + strand, within GFF4154 at 36.471 kb on - strand, within GFF4154 at 36.471 kb on - strand, within GFF4154 at 36.528 kb on + strand, within GFF4154 at 36.529 kb on - strand, within GFF4154 at 36.585 kb on - strand, within GFF4154 at 36.676 kb on - strand, within GFF4154 at 36.742 kb on - strand, within GFF4154 at 36.832 kb on - strand at 36.896 kb on + strand at 36.950 kb on - strand at 37.040 kb on + strand at 37.042 kb on + strand at 37.042 kb on + strand at 37.108 kb on + strand at 37.177 kb on + strand, within GFF4155 at 37.405 kb on + strand, within GFF4155 at 37.439 kb on - strand, within GFF4155 at 37.442 kb on + strand, within GFF4155 at 37.462 kb on - strand, within GFF4155 at 37.508 kb on - strand, within GFF4155 at 37.799 kb on + strand, within GFF4155 at 37.843 kb on - strand, within GFF4155 at 37.869 kb on + strand, within GFF4155 at 37.870 kb on - strand, within GFF4155 at 37.870 kb on - strand, within GFF4155 at 38.014 kb on - strand, within GFF4155 at 38.041 kb on + strand, within GFF4155 at 38.042 kb on - strand, within GFF4155 at 38.054 kb on - strand, within GFF4155 at 38.090 kb on - strand, within GFF4155 at 38.277 kb on + strand at 38.278 kb on - strand at 38.291 kb on + strand at 38.292 kb on - strand at 38.383 kb on + strand at 38.485 kb on + strand at 38.530 kb on - strand at 38.563 kb on + strand at 38.571 kb on + strand at 38.867 kb on + strand at 38.871 kb on + strand at 38.872 kb on - strand at 38.872 kb on - strand at 38.872 kb on - strand at 38.931 kb on - strand at 39.375 kb on + strand at 39.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 36,087 + GFF4154 0.59 +0.1 36,088 - GFF4154 0.59 -0.1 36,138 + GFF4154 0.62 +1.6 36,139 - GFF4154 0.62 -1.7 36,205 - GFF4154 0.65 +0.5 36,364 - GFF4154 0.72 +0.3 36,369 - GFF4154 0.72 -1.0 36,466 + GFF4154 0.77 -0.1 36,470 + GFF4154 0.77 -0.2 36,471 - GFF4154 0.77 -1.1 36,471 - GFF4154 0.77 +0.3 36,528 + GFF4154 0.80 +0.9 36,529 - GFF4154 0.80 -0.1 36,585 - GFF4154 0.82 -0.6 36,676 - GFF4154 0.86 +0.3 36,742 - GFF4154 0.89 -0.3 36,832 - -0.0 36,896 + -0.3 36,950 - +1.3 37,040 + -0.1 37,042 + +0.2 37,042 + -0.4 37,108 + +0.0 37,177 + GFF4155 0.15 -0.6 37,405 + GFF4155 0.31 -0.4 37,439 - GFF4155 0.33 +0.2 37,442 + GFF4155 0.34 +0.3 37,462 - GFF4155 0.35 -0.4 37,508 - GFF4155 0.38 +0.1 37,799 + GFF4155 0.59 -0.2 37,843 - GFF4155 0.62 -0.4 37,869 + GFF4155 0.64 +0.1 37,870 - GFF4155 0.64 +0.1 37,870 - GFF4155 0.64 -0.8 38,014 - GFF4155 0.74 +0.1 38,041 + GFF4155 0.76 -1.1 38,042 - GFF4155 0.76 +0.3 38,054 - GFF4155 0.77 -0.8 38,090 - GFF4155 0.80 +0.8 38,277 + +0.4 38,278 - +0.5 38,291 + -0.6 38,292 - -0.5 38,383 + +0.0 38,485 + -0.0 38,530 - -0.5 38,563 + +0.3 38,571 + +0.2 38,867 + +0.6 38,871 + -0.8 38,872 - -1.2 38,872 - +0.1 38,872 - -0.5 38,931 - +0.4 39,375 + -0.4 39,375 + +0.5
Or see this region's nucleotide sequence