Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4105 and GFF4106 overlap by 4 nucleotides GFF4106 and GFF4107 overlap by 4 nucleotides GFF4107 and GFF4108 are separated by 155 nucleotides GFF4108 and GFF4109 are separated by 248 nucleotides GFF4109 and GFF4110 are separated by 88 nucleotides
GFF4105 - Protein with similarity to RtcB, at 64,484 to 65,458
GFF4105
GFF4106 - Protein with similarity to RtcB, at 65,455 to 65,616
GFF4106
GFF4107 - Peptide chain release factor homolog, at 65,613 to 66,227
GFF4107
GFF4108 - Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3), at 66,383 to 67,840
GFF4108
GFF4109 - Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22), at 68,089 to 68,547
GFF4109
GFF4110 - Fermentation/respiration switch protein, at 68,636 to 69,880
GFF4110
Position (kb) 66
67
68 Strain fitness (log2 ratio) -2
-1
0
1 at 65.482 kb on + strand, within GFF4106 at 65.483 kb on - strand, within GFF4106 at 65.503 kb on + strand, within GFF4106 at 65.503 kb on + strand, within GFF4106 at 65.506 kb on - strand, within GFF4106 at 65.717 kb on - strand, within GFF4107 at 65.753 kb on - strand, within GFF4107 at 65.753 kb on - strand, within GFF4107 at 65.923 kb on + strand, within GFF4107 at 65.987 kb on + strand, within GFF4107 at 65.988 kb on - strand, within GFF4107 at 66.201 kb on - strand at 66.249 kb on - strand at 66.286 kb on + strand at 66.310 kb on + strand at 66.452 kb on + strand at 66.452 kb on + strand at 66.452 kb on + strand at 66.453 kb on - strand at 66.709 kb on + strand, within GFF4108 at 66.710 kb on - strand, within GFF4108 at 66.710 kb on - strand, within GFF4108 at 66.710 kb on - strand, within GFF4108 at 66.994 kb on - strand, within GFF4108 at 67.229 kb on - strand, within GFF4108 at 67.312 kb on - strand, within GFF4108 at 67.312 kb on - strand, within GFF4108 at 67.450 kb on + strand, within GFF4108 at 67.451 kb on - strand, within GFF4108 at 67.451 kb on - strand, within GFF4108 at 67.543 kb on + strand, within GFF4108 at 67.543 kb on + strand, within GFF4108 at 67.544 kb on - strand, within GFF4108 at 67.544 kb on - strand, within GFF4108 at 67.544 kb on - strand, within GFF4108 at 67.544 kb on - strand, within GFF4108 at 67.545 kb on + strand, within GFF4108 at 67.546 kb on - strand, within GFF4108 at 67.546 kb on - strand, within GFF4108 at 67.546 kb on - strand, within GFF4108 at 67.546 kb on - strand, within GFF4108 at 67.556 kb on - strand, within GFF4108 at 67.649 kb on - strand, within GFF4108 at 67.704 kb on + strand at 67.705 kb on - strand at 67.778 kb on - strand at 67.778 kb on - strand at 67.843 kb on + strand at 67.843 kb on + strand at 67.843 kb on + strand at 67.844 kb on - strand at 67.911 kb on + strand at 67.911 kb on + strand at 67.911 kb on + strand at 67.955 kb on + strand at 67.958 kb on - strand at 67.958 kb on - strand at 68.034 kb on + strand at 68.034 kb on + strand at 68.035 kb on - strand at 68.035 kb on - strand at 68.276 kb on - strand, within GFF4109 at 68.399 kb on - strand, within GFF4109 at 68.462 kb on - strand, within GFF4109 at 68.467 kb on - strand, within GFF4109 at 68.602 kb on + strand at 68.602 kb on + strand at 68.617 kb on - strand at 68.698 kb on + strand at 68.788 kb on - strand, within GFF4110
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 65,482 + GFF4106 0.17 +0.3 65,483 - GFF4106 0.17 +0.2 65,503 + GFF4106 0.30 +0.1 65,503 + GFF4106 0.30 -0.6 65,506 - GFF4106 0.31 +0.2 65,717 - GFF4107 0.17 -0.1 65,753 - GFF4107 0.23 -0.3 65,753 - GFF4107 0.23 -0.4 65,923 + GFF4107 0.50 -0.5 65,987 + GFF4107 0.61 +0.3 65,988 - GFF4107 0.61 +1.3 66,201 - +1.6 66,249 - +0.7 66,286 + +1.1 66,310 + +0.3 66,452 + -1.1 66,452 + -1.1 66,452 + -0.3 66,453 - -0.3 66,709 + GFF4108 0.22 -0.2 66,710 - GFF4108 0.22 -1.0 66,710 - GFF4108 0.22 -0.6 66,710 - GFF4108 0.22 +0.3 66,994 - GFF4108 0.42 +0.2 67,229 - GFF4108 0.58 -0.3 67,312 - GFF4108 0.64 -0.5 67,312 - GFF4108 0.64 -0.5 67,450 + GFF4108 0.73 -0.4 67,451 - GFF4108 0.73 -0.3 67,451 - GFF4108 0.73 -0.3 67,543 + GFF4108 0.80 -0.5 67,543 + GFF4108 0.80 -0.6 67,544 - GFF4108 0.80 -0.1 67,544 - GFF4108 0.80 +0.3 67,544 - GFF4108 0.80 +1.0 67,544 - GFF4108 0.80 +0.1 67,545 + GFF4108 0.80 -0.5 67,546 - GFF4108 0.80 -0.6 67,546 - GFF4108 0.80 +0.6 67,546 - GFF4108 0.80 +0.0 67,546 - GFF4108 0.80 -0.4 67,556 - GFF4108 0.80 -0.3 67,649 - GFF4108 0.87 -0.4 67,704 + +0.1 67,705 - -0.1 67,778 - -0.6 67,778 - -0.3 67,843 + -2.4 67,843 + -0.3 67,843 + -0.0 67,844 - -0.9 67,911 + -0.1 67,911 + -0.1 67,911 + -0.3 67,955 + +0.5 67,958 - +0.0 67,958 - +0.5 68,034 + -0.5 68,034 + +0.5 68,035 - -0.4 68,035 - -0.2 68,276 - GFF4109 0.41 -0.2 68,399 - GFF4109 0.68 +0.0 68,462 - GFF4109 0.81 -0.9 68,467 - GFF4109 0.82 +0.1 68,602 + +0.5 68,602 + -0.3 68,617 - -0.4 68,698 + -0.0 68,788 - GFF4110 0.12 -0.4
Or see this region's nucleotide sequence