Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4089

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4087 and GFF4088 are separated by 691 nucleotidesGFF4088 and GFF4089 are separated by 0 nucleotidesGFF4089 and GFF4090 are separated by 336 nucleotides GFF4087 - Mobile element protein, at 46,588 to 46,869 GFF4087 GFF4088 - hypothetical protein, at 47,561 to 47,686 GFF4088 GFF4089 - hypothetical protein, at 47,687 to 47,818 GFF4089 GFF4090 - Periplasmic fimbrial chaperone protein, at 48,155 to 48,952 GFF4090 Position (kb) 47 48Strain fitness (log2 ratio) -1 0 1at 46.740 kb on - strand, within GFF4087at 47.073 kb on - strandat 47.942 kb on + strandat 48.051 kb on - strandat 48.152 kb on - strandat 48.268 kb on + strand, within GFF4090at 48.280 kb on - strand, within GFF4090at 48.313 kb on + strand, within GFF4090at 48.574 kb on + strand, within GFF4090at 48.665 kb on - strand, within GFF4090at 48.817 kb on + strand, within GFF4090at 48.817 kb on + strand, within GFF4090

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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46,740 - GFF4087 0.54 -0.6
47,073 - -0.2
47,942 + +0.2
48,051 - -0.3
48,152 - -0.2
48,268 + GFF4090 0.14 -0.2
48,280 - GFF4090 0.16 -0.4
48,313 + GFF4090 0.20 -0.1
48,574 + GFF4090 0.53 +0.0
48,665 - GFF4090 0.64 +0.3
48,817 + GFF4090 0.83 +0.4
48,817 + GFF4090 0.83 +0.0

Or see this region's nucleotide sequence