Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4086

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4083 and GFF4084 overlap by 8 nucleotidesGFF4084 and GFF4085 overlap by 50 nucleotidesGFF4085 and GFF4086 are separated by 204 nucleotidesGFF4086 and GFF4087 are separated by 202 nucleotides GFF4083 - putative cytoplasmic protein, at 45,511 to 45,762 GFF4083 GFF4084 - FIG01045272: hypothetical protein, at 45,755 to 45,913 GFF4084 GFF4085 - FIG01046190: hypothetical protein, at 45,864 to 46,040 GFF4085 GFF4086 - hypothetical protein, at 46,245 to 46,385 GFF4086 GFF4087 - Mobile element protein, at 46,588 to 46,869 GFF4087 Position (kb) 46 47Strain fitness (log2 ratio) -1 0 1 2at 45.296 kb on + strandat 46.084 kb on + strandat 46.085 kb on - strandat 46.088 kb on + strandat 46.089 kb on - strandat 46.121 kb on - strandat 46.121 kb on - strandat 46.137 kb on - strandat 46.210 kb on - strandat 46.236 kb on + strandat 46.312 kb on - strand, within GFF4086at 46.740 kb on - strand, within GFF4087at 47.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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45,296 + -0.4
46,084 + +0.1
46,085 - -0.6
46,088 + -0.4
46,089 - +0.2
46,121 - +0.5
46,121 - -0.4
46,137 - -0.2
46,210 - +1.8
46,236 + -0.6
46,312 - GFF4086 0.48 +0.3
46,740 - GFF4087 0.54 -0.6
47,073 - -0.2

Or see this region's nucleotide sequence