Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4027
Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | C.elegans, mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
292,646 | - | GFF4025 | 0.64 | -0.1 | |
292,717 | + | GFF4025 | 0.68 | +0.3 | |
292,718 | - | GFF4025 | 0.68 | -0.4 | |
292,718 | - | GFF4025 | 0.68 | +0.2 | |
292,738 | + | GFF4025 | 0.70 | +0.3 | |
293,026 | - | GFF4025 | 0.89 | +0.7 | |
293,356 | + | GFF4026 | 0.27 | -2.4 | |
293,356 | + | GFF4026 | 0.27 | -1.7 | |
293,357 | - | GFF4026 | 0.27 | -1.8 | |
293,588 | - | GFF4026 | 0.89 | -0.5 | |
293,683 | - | GFF4027 | 0.14 | -3.1 | |
293,769 | - | GFF4027 | 0.35 | -1.9 | |
294,063 | - | -1.2 | |||
294,090 | - | -0.9 | |||
294,450 | - | GFF4028 | 0.29 | +0.1 | |
294,459 | - | GFF4028 | 0.29 | -0.1 |
Or see this region's nucleotide sequence