Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4027

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4025 and GFF4026 are separated by 71 nucleotidesGFF4026 and GFF4027 overlap by 1 nucleotidesGFF4027 and GFF4028 are separated by 14 nucleotides GFF4025 - Cytoplasmic alpha-amylase (EC 3.2.1.1), at 291,702 to 293,186 GFF4025 GFF4026 - Flagellar biosynthesis protein FliT, at 293,258 to 293,626 GFF4026 GFF4027 - Flagellar biosynthesis protein FliS, at 293,626 to 294,033 GFF4027 GFF4028 - Flagellar hook-associated protein FliD, at 294,048 to 295,451 GFF4028 Position (kb) 293 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1at 292.646 kb on - strand, within GFF4025at 292.717 kb on + strand, within GFF4025at 292.718 kb on - strand, within GFF4025at 292.718 kb on - strand, within GFF4025at 292.738 kb on + strand, within GFF4025at 293.026 kb on - strand, within GFF4025at 293.356 kb on + strand, within GFF4026at 293.356 kb on + strand, within GFF4026at 293.357 kb on - strand, within GFF4026at 293.588 kb on - strand, within GFF4026at 293.683 kb on - strand, within GFF4027at 293.769 kb on - strand, within GFF4027at 294.063 kb on - strandat 294.090 kb on - strandat 294.450 kb on - strand, within GFF4028at 294.459 kb on - strand, within GFF4028

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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292,646 - GFF4025 0.64 -0.1
292,717 + GFF4025 0.68 +0.3
292,718 - GFF4025 0.68 -0.4
292,718 - GFF4025 0.68 +0.2
292,738 + GFF4025 0.70 +0.3
293,026 - GFF4025 0.89 +0.7
293,356 + GFF4026 0.27 -2.4
293,356 + GFF4026 0.27 -1.7
293,357 - GFF4026 0.27 -1.8
293,588 - GFF4026 0.89 -0.5
293,683 - GFF4027 0.14 -3.1
293,769 - GFF4027 0.35 -1.9
294,063 - -1.2
294,090 - -0.9
294,450 - GFF4028 0.29 +0.1
294,459 - GFF4028 0.29 -0.1

Or see this region's nucleotide sequence