Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3966 and GFF3967 overlap by 4 nucleotides GFF3967 and GFF3968 overlap by 4 nucleotides GFF3968 and GFF3969 are separated by 26 nucleotides
GFF3966 - Cobyric acid synthase (EC 6.3.5.10), at 243,651 to 245,171
GFF3966
GFF3967 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 245,168 to 245,713
GFF3967
GFF3968 - Cobalamin synthase (EC 2.7.8.26), at 245,710 to 246,453
GFF3968
GFF3969 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 246,480 to 247,550
GFF3969
Position (kb) 245
246 Strain fitness (log2 ratio) -1
0
1 at 244.219 kb on + strand, within GFF3966 at 244.233 kb on - strand, within GFF3966 at 244.266 kb on + strand, within GFF3966 at 244.267 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.434 kb on - strand, within GFF3966 at 244.454 kb on + strand, within GFF3966 at 244.491 kb on + strand, within GFF3966 at 244.728 kb on - strand, within GFF3966 at 245.253 kb on - strand, within GFF3967 at 245.253 kb on - strand, within GFF3967 at 245.254 kb on + strand, within GFF3967 at 245.309 kb on - strand, within GFF3967 at 245.413 kb on + strand, within GFF3967 at 245.413 kb on + strand, within GFF3967 at 245.414 kb on - strand, within GFF3967 at 245.559 kb on + strand, within GFF3967 at 245.849 kb on + strand, within GFF3968 at 246.182 kb on - strand, within GFF3968 at 246.182 kb on - strand, within GFF3968 at 246.222 kb on - strand, within GFF3968 at 246.259 kb on - strand, within GFF3968 at 246.303 kb on + strand, within GFF3968 at 246.366 kb on + strand, within GFF3968 at 246.450 kb on - strand at 246.479 kb on + strand at 246.479 kb on + strand at 246.480 kb on - strand at 246.490 kb on + strand at 246.554 kb on + strand at 246.635 kb on + strand, within GFF3969
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 244,219 + GFF3966 0.37 -0.1 244,233 - GFF3966 0.38 +0.2 244,266 + GFF3966 0.40 -0.1 244,267 - GFF3966 0.40 +0.1 244,434 - GFF3966 0.51 +1.6 244,434 - GFF3966 0.51 +1.3 244,434 - GFF3966 0.51 -1.3 244,434 - GFF3966 0.51 -0.8 244,454 + GFF3966 0.53 +0.5 244,491 + GFF3966 0.55 +0.0 244,728 - GFF3966 0.71 +0.1 245,253 - GFF3967 0.16 -0.8 245,253 - GFF3967 0.16 -0.6 245,254 + GFF3967 0.16 +0.7 245,309 - GFF3967 0.26 +0.2 245,413 + GFF3967 0.45 +0.1 245,413 + GFF3967 0.45 -0.5 245,414 - GFF3967 0.45 -0.1 245,559 + GFF3967 0.72 -0.1 245,849 + GFF3968 0.19 -0.4 246,182 - GFF3968 0.63 -0.2 246,182 - GFF3968 0.63 -0.0 246,222 - GFF3968 0.69 -0.3 246,259 - GFF3968 0.74 +0.4 246,303 + GFF3968 0.80 -0.1 246,366 + GFF3968 0.88 -0.4 246,450 - -0.1 246,479 + -0.8 246,479 + +0.9 246,480 - -0.0 246,490 + -0.2 246,554 + -0.2 246,635 + GFF3969 0.14 -0.2
Or see this region's nucleotide sequence