Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3961 and GFF3962 overlap by 4 nucleotides GFF3962 and GFF3963 are separated by 1 nucleotides GFF3963 and GFF3964 overlap by 14 nucleotides GFF3964 and GFF3965 are separated by 8 nucleotides
GFF3961 - Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130), at 240,436 to 241,149
GFF3961
GFF3962 - Substrate-specific component CbiM of cobalt ECF transporter, at 241,146 to 241,883
GFF3962
GFF3963 - Additional substrate-specific component CbiN of cobalt ECF transporter, at 241,885 to 242,166
GFF3963
GFF3964 - Transmembrane component CbiQ of energizing module of cobalt ECF transporter, at 242,153 to 242,830
GFF3964
GFF3965 - ATPase component CbiO of energizing module of cobalt ECF transporter, at 242,839 to 243,654
GFF3965
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1 at 240.927 kb on - strand, within GFF3961 at 241.125 kb on + strand at 241.126 kb on - strand at 241.139 kb on - strand at 241.288 kb on + strand, within GFF3962 at 241.297 kb on + strand, within GFF3962 at 241.466 kb on + strand, within GFF3962 at 242.019 kb on + strand, within GFF3963 at 242.019 kb on + strand, within GFF3963 at 242.020 kb on - strand, within GFF3963 at 242.020 kb on - strand, within GFF3963 at 242.039 kb on + strand, within GFF3963 at 242.241 kb on + strand, within GFF3964 at 242.323 kb on - strand, within GFF3964 at 242.393 kb on - strand, within GFF3964 at 242.436 kb on + strand, within GFF3964 at 242.551 kb on - strand, within GFF3964 at 242.828 kb on + strand at 242.835 kb on + strand at 242.838 kb on + strand at 242.839 kb on - strand at 242.889 kb on + strand at 242.897 kb on + strand at 242.970 kb on + strand, within GFF3965 at 243.141 kb on + strand, within GFF3965
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 240,927 - GFF3961 0.69 -0.1 241,125 + +1.2 241,126 - -0.2 241,139 - +0.1 241,288 + GFF3962 0.19 +0.2 241,297 + GFF3962 0.20 -0.1 241,466 + GFF3962 0.43 -0.5 242,019 + GFF3963 0.48 +0.8 242,019 + GFF3963 0.48 +0.5 242,020 - GFF3963 0.48 +0.3 242,020 - GFF3963 0.48 +1.4 242,039 + GFF3963 0.55 -0.2 242,241 + GFF3964 0.13 -0.1 242,323 - GFF3964 0.25 -1.2 242,393 - GFF3964 0.35 -0.1 242,436 + GFF3964 0.42 +0.2 242,551 - GFF3964 0.59 +0.1 242,828 + +0.1 242,835 + -0.2 242,838 + +0.0 242,839 - +0.4 242,889 + +0.3 242,897 + +0.3 242,970 + GFF3965 0.16 -0.3 243,141 + GFF3965 0.37 +1.1
Or see this region's nucleotide sequence