Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3938 and GFF3939 overlap by 1 nucleotides GFF3939 and GFF3940 are separated by 24 nucleotides GFF3940 and GFF3941 are separated by 18 nucleotides GFF3941 and GFF3942 overlap by 11 nucleotides
GFF3938 - Ethanolamine utilization protein similar to PduL, at 220,416 to 221,048
GFF3938
GFF3939 - Propanediol utilization polyhedral body protein PduK, at 221,048 to 221,509
GFF3939
GFF3940 - Propanediol utilization polyhedral body protein PduJ, at 221,534 to 221,809
GFF3940
GFF3941 - Propanediol dehydratase reactivation factor small subunit, at 221,828 to 222,178
GFF3941
GFF3942 - Propanediol dehydratase reactivation factor large subunit, at 222,168 to 224,000
GFF3942
Position (kb) 221
222 Strain fitness (log2 ratio) -2
-1
0
1 at 220.628 kb on + strand, within GFF3938 at 220.628 kb on + strand, within GFF3938 at 220.629 kb on - strand, within GFF3938 at 220.959 kb on - strand, within GFF3938 at 221.724 kb on - strand, within GFF3940 at 221.829 kb on + strand at 221.958 kb on + strand, within GFF3941 at 221.958 kb on + strand, within GFF3941 at 221.959 kb on - strand, within GFF3941
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 220,628 + GFF3938 0.33 -2.3 220,628 + GFF3938 0.33 +0.2 220,629 - GFF3938 0.34 +0.5 220,959 - GFF3938 0.86 -0.7 221,724 - GFF3940 0.69 +0.9 221,829 + +0.1 221,958 + GFF3941 0.37 -0.3 221,958 + GFF3941 0.37 -0.2 221,959 - GFF3941 0.37 -0.8
Or see this region's nucleotide sequence