Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3929 and GFF3930 are separated by 16 nucleotides GFF3930 and GFF3931 overlap by 1 nucleotides GFF3931 and GFF3932 are separated by 2 nucleotides GFF3932 and GFF3933 overlap by 4 nucleotides
GFF3929 - Propanediol utilization protein PduV, at 213,398 to 213,838
GFF3929
GFF3930 - Propanediol utilization polyhedral body protein PduU, at 213,855 to 214,205
GFF3930
GFF3931 - Propanediol utilization polyhedral body protein PduT, at 214,205 to 214,759
GFF3931
GFF3932 - Cob(III)alamin reductase @ Cob(II)alamin reductase, at 214,762 to 216,117
GFF3932
GFF3933 - Putative iron-containing NADPH-dependent propanol dehydrogenase, at 216,114 to 217,226
GFF3933
Position (kb) 214
215
216
217 Strain fitness (log2 ratio) -1
0
1 at 213.769 kb on - strand, within GFF3929 at 213.857 kb on - strand at 214.165 kb on + strand, within GFF3930 at 214.166 kb on - strand, within GFF3930 at 214.351 kb on - strand, within GFF3931 at 214.357 kb on + strand, within GFF3931 at 214.358 kb on - strand, within GFF3931 at 214.358 kb on - strand, within GFF3931 at 214.379 kb on - strand, within GFF3931 at 214.517 kb on + strand, within GFF3931 at 214.667 kb on + strand, within GFF3931 at 214.772 kb on - strand at 214.926 kb on + strand, within GFF3932 at 215.108 kb on - strand, within GFF3932 at 215.485 kb on - strand, within GFF3932 at 215.527 kb on + strand, within GFF3932 at 215.527 kb on + strand, within GFF3932 at 215.665 kb on - strand, within GFF3932 at 215.775 kb on + strand, within GFF3932 at 215.999 kb on - strand at 216.117 kb on + strand at 216.288 kb on - strand, within GFF3933 at 216.802 kb on + strand, within GFF3933 at 216.828 kb on - strand, within GFF3933
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 213,769 - GFF3929 0.84 -0.5 213,857 - -0.6 214,165 + GFF3930 0.88 -0.2 214,166 - GFF3930 0.89 +0.1 214,351 - GFF3931 0.26 +0.8 214,357 + GFF3931 0.27 +0.5 214,358 - GFF3931 0.28 +0.3 214,358 - GFF3931 0.28 +0.5 214,379 - GFF3931 0.31 -0.2 214,517 + GFF3931 0.56 -0.1 214,667 + GFF3931 0.83 -1.0 214,772 - -1.0 214,926 + GFF3932 0.12 -0.8 215,108 - GFF3932 0.26 -0.2 215,485 - GFF3932 0.53 -0.3 215,527 + GFF3932 0.56 +0.1 215,527 + GFF3932 0.56 -0.4 215,665 - GFF3932 0.67 -0.1 215,775 + GFF3932 0.75 -0.3 215,999 - -0.3 216,117 + +0.3 216,288 - GFF3933 0.16 +0.1 216,802 + GFF3933 0.62 -0.1 216,828 - GFF3933 0.64 +0.4
Or see this region's nucleotide sequence