Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3901

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3900 and GFF3901 overlap by 14 nucleotidesGFF3901 and GFF3902 are separated by 71 nucleotides GFF3900 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8), at 179,669 to 181,000 GFF3900 GFF3901 - Phosphomannomutase (EC 5.4.2.8), at 180,987 to 182,420 GFF3901 GFF3902 - Undecaprenyl-phosphate galactosephosphotransferase (EC 2.7.8.6), at 182,492 to 183,922 GFF3902 Position (kb) 180 181 182 183Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 180.952 kb on - strandat 181.252 kb on + strand, within GFF3901at 181.633 kb on + strand, within GFF3901at 181.648 kb on + strand, within GFF3901at 183.205 kb on + strand, within GFF3902

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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180,952 - -2.5
181,252 + GFF3901 0.18 -0.7
181,633 + GFF3901 0.45 -5.0
181,648 + GFF3901 0.46 -4.0
183,205 + GFF3902 0.50 -2.6

Or see this region's nucleotide sequence