Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3899

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3898 and GFF3899 are separated by 0 nucleotidesGFF3899 and GFF3900 are separated by 108 nucleotides GFF3898 - O-antigen flippase Wzx, at 177,554 to 178,615 GFF3898 GFF3899 - O antigen biosynthesis rhamnosyltransferase rfbN (EC 2.4.1.-), at 178,616 to 179,560 GFF3899 GFF3900 - Mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22) / Mannose-6-phosphate isomerase (EC 5.3.1.8), at 179,669 to 181,000 GFF3900 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 177.665 kb on - strand, within GFF3898at 179.418 kb on + strand, within GFF3899at 179.821 kb on + strand, within GFF3900

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
177,665 - GFF3898 0.10 -1.4
179,418 + GFF3899 0.85 -0.7
179,821 + GFF3900 0.11 -4.3

Or see this region's nucleotide sequence