Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3886 and GFF3887 are separated by 376 nucleotides GFF3887 and GFF3888 overlap by 1 nucleotides GFF3888 and GFF3889 are separated by 41 nucleotides
GFF3886 - UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9), at 165,003 to 165,896
GFF3886
GFF3887 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 166,273 to 167,358
GFF3887
GFF3888 - dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133), at 167,358 to 168,257
GFF3888
GFF3889 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 168,299 to 169,183
GFF3889
Position (kb) 166
167
168 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 165.275 kb on + strand, within GFF3886 at 165.341 kb on + strand, within GFF3886 at 165.341 kb on + strand, within GFF3886 at 165.342 kb on - strand, within GFF3886 at 165.435 kb on + strand, within GFF3886 at 165.435 kb on + strand, within GFF3886 at 165.436 kb on - strand, within GFF3886 at 165.437 kb on + strand, within GFF3886 at 165.783 kb on + strand, within GFF3886 at 165.784 kb on - strand, within GFF3886 at 165.874 kb on + strand at 165.875 kb on - strand at 166.085 kb on + strand at 166.158 kb on - strand at 166.585 kb on + strand, within GFF3887 at 166.612 kb on + strand, within GFF3887 at 166.764 kb on + strand, within GFF3887 at 166.825 kb on + strand, within GFF3887 at 166.857 kb on + strand, within GFF3887 at 166.860 kb on + strand, within GFF3887 at 166.864 kb on + strand, within GFF3887 at 166.864 kb on + strand, within GFF3887 at 166.973 kb on + strand, within GFF3887 at 166.975 kb on + strand, within GFF3887 at 166.976 kb on - strand, within GFF3887 at 166.976 kb on - strand, within GFF3887 at 167.004 kb on + strand, within GFF3887 at 167.082 kb on - strand, within GFF3887 at 167.086 kb on - strand, within GFF3887 at 167.149 kb on + strand, within GFF3887 at 167.150 kb on - strand, within GFF3887 at 167.150 kb on - strand, within GFF3887 at 167.341 kb on + strand at 167.368 kb on + strand at 167.510 kb on + strand, within GFF3888 at 167.557 kb on + strand, within GFF3888 at 167.673 kb on + strand, within GFF3888 at 167.828 kb on + strand, within GFF3888 at 167.828 kb on + strand, within GFF3888 at 168.043 kb on + strand, within GFF3888 at 168.095 kb on + strand, within GFF3888 at 168.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 165,275 + GFF3886 0.30 -0.8 165,341 + GFF3886 0.38 -0.3 165,341 + GFF3886 0.38 +1.6 165,342 - GFF3886 0.38 -0.3 165,435 + GFF3886 0.48 +0.2 165,435 + GFF3886 0.48 +0.0 165,436 - GFF3886 0.48 -1.2 165,437 + GFF3886 0.49 +0.1 165,783 + GFF3886 0.87 +0.4 165,784 - GFF3886 0.87 -0.7 165,874 + +0.3 165,875 - -2.0 166,085 + -0.3 166,158 - -1.0 166,585 + GFF3887 0.29 -2.3 166,612 + GFF3887 0.31 -2.6 166,764 + GFF3887 0.45 -3.3 166,825 + GFF3887 0.51 -2.8 166,857 + GFF3887 0.54 -3.2 166,860 + GFF3887 0.54 -2.0 166,864 + GFF3887 0.54 -2.8 166,864 + GFF3887 0.54 -3.2 166,973 + GFF3887 0.64 -0.8 166,975 + GFF3887 0.65 -1.7 166,976 - GFF3887 0.65 -3.9 166,976 - GFF3887 0.65 -2.6 167,004 + GFF3887 0.67 -1.0 167,082 - GFF3887 0.74 -2.8 167,086 - GFF3887 0.75 -1.7 167,149 + GFF3887 0.81 -1.9 167,150 - GFF3887 0.81 +0.6 167,150 - GFF3887 0.81 -2.9 167,341 + -0.1 167,368 + -1.2 167,510 + GFF3888 0.17 -3.8 167,557 + GFF3888 0.22 -1.6 167,673 + GFF3888 0.35 -2.3 167,828 + GFF3888 0.52 -2.1 167,828 + GFF3888 0.52 -4.2 168,043 + GFF3888 0.76 -3.6 168,095 + GFF3888 0.82 -3.5 168,264 + +0.0
Or see this region's nucleotide sequence