Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3815 and GFF3816 overlap by 8 nucleotides GFF3816 and GFF3817 overlap by 17 nucleotides GFF3817 and GFF3818 are separated by 147 nucleotides
GFF3815 - Osmoprotectant ABC transporter permease protein YehY, at 84,781 to 85,950
GFF3815
GFF3816 - Osmoprotectant ABC transporter ATP-binding subunit YehX, at 85,943 to 86,890
GFF3816
GFF3817 - Osmoprotectant ABC transporter inner membrane protein YehW, at 86,874 to 87,605
GFF3817
GFF3818 - HTH-type transcriptional regulator mlrA, at 87,753 to 88,484
GFF3818
Position (kb) 85
86
87 Strain fitness (log2 ratio) -1
0
1
2 at 85.183 kb on - strand, within GFF3815 at 85.183 kb on - strand, within GFF3815 at 85.289 kb on - strand, within GFF3815 at 85.289 kb on - strand, within GFF3815 at 85.289 kb on - strand, within GFF3815 at 85.380 kb on - strand, within GFF3815 at 85.380 kb on - strand, within GFF3815 at 85.456 kb on - strand, within GFF3815 at 85.585 kb on + strand, within GFF3815 at 85.586 kb on - strand, within GFF3815 at 85.731 kb on - strand, within GFF3815 at 85.748 kb on + strand, within GFF3815 at 85.749 kb on - strand, within GFF3815 at 85.749 kb on - strand, within GFF3815 at 85.914 kb on - strand at 86.280 kb on + strand, within GFF3816 at 86.538 kb on + strand, within GFF3816 at 86.606 kb on - strand, within GFF3816 at 86.606 kb on - strand, within GFF3816 at 86.683 kb on - strand, within GFF3816 at 86.687 kb on - strand, within GFF3816 at 86.700 kb on - strand, within GFF3816 at 86.906 kb on + strand at 87.413 kb on + strand, within GFF3817 at 87.459 kb on - strand, within GFF3817 at 87.489 kb on - strand, within GFF3817 at 87.498 kb on - strand, within GFF3817 at 87.513 kb on - strand, within GFF3817 at 87.699 kb on - strand at 87.706 kb on - strand at 87.723 kb on - strand at 87.844 kb on - strand, within GFF3818 at 87.850 kb on - strand, within GFF3818
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 85,183 - GFF3815 0.34 -0.1 85,183 - GFF3815 0.34 -0.7 85,289 - GFF3815 0.43 -1.2 85,289 - GFF3815 0.43 -0.4 85,289 - GFF3815 0.43 +0.3 85,380 - GFF3815 0.51 +2.3 85,380 - GFF3815 0.51 +0.2 85,456 - GFF3815 0.58 -0.2 85,585 + GFF3815 0.69 +0.2 85,586 - GFF3815 0.69 +0.1 85,731 - GFF3815 0.81 +0.0 85,748 + GFF3815 0.83 +0.0 85,749 - GFF3815 0.83 +0.6 85,749 - GFF3815 0.83 -0.4 85,914 - +0.3 86,280 + GFF3816 0.36 -0.2 86,538 + GFF3816 0.63 -0.0 86,606 - GFF3816 0.70 +0.3 86,606 - GFF3816 0.70 -0.0 86,683 - GFF3816 0.78 +1.2 86,687 - GFF3816 0.78 +2.1 86,700 - GFF3816 0.80 +0.5 86,906 + -0.3 87,413 + GFF3817 0.74 -0.4 87,459 - GFF3817 0.80 -0.4 87,489 - GFF3817 0.84 -0.1 87,498 - GFF3817 0.85 +0.1 87,513 - GFF3817 0.87 +0.1 87,699 - -0.0 87,706 - +0.8 87,723 - -0.4 87,844 - GFF3818 0.12 +0.1 87,850 - GFF3818 0.13 +0.2
Or see this region's nucleotide sequence