Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF379 and GFF380 overlap by 4 nucleotides GFF380 and GFF381 overlap by 8 nucleotides GFF381 and GFF382 are separated by 55 nucleotides
GFF379 - Lipopolysaccharide heptosyltransferase III (EC 2.4.1.-), at 94,203 to 95,219
GFF379
GFF380 - UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase WaaG (EC 2.4.1.-), at 95,216 to 96,340
GFF380
GFF381 - Lipopolysaccharide core biosynthesis protein WaaP (EC 2.7.-.-), heptosyl-I-kinase, at 96,333 to 97,130
GFF381
GFF382 - UDP-glucose:(glucosyl)lipopolysaccharide alpha-1,3-glucosyltransferase WaaO (EC 2.4.1.-), at 97,186 to 97,395
GFF382
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 94.403 kb on + strand, within GFF379 at 94.543 kb on + strand, within GFF379 at 94.547 kb on - strand, within GFF379 at 94.551 kb on + strand, within GFF379 at 94.614 kb on + strand, within GFF379 at 94.614 kb on + strand, within GFF379 at 94.614 kb on + strand, within GFF379 at 94.615 kb on - strand, within GFF379 at 94.615 kb on - strand, within GFF379 at 94.701 kb on + strand, within GFF379 at 94.701 kb on + strand, within GFF379 at 94.737 kb on - strand, within GFF379 at 94.749 kb on - strand, within GFF379 at 94.769 kb on + strand, within GFF379 at 94.850 kb on + strand, within GFF379 at 94.851 kb on - strand, within GFF379 at 94.973 kb on + strand, within GFF379 at 95.030 kb on - strand, within GFF379 at 95.198 kb on - strand at 95.239 kb on + strand at 95.240 kb on - strand at 95.325 kb on - strand at 95.417 kb on + strand, within GFF380 at 95.576 kb on + strand, within GFF380 at 95.634 kb on + strand, within GFF380 at 95.635 kb on - strand, within GFF380 at 95.650 kb on + strand, within GFF380 at 95.651 kb on - strand, within GFF380 at 95.909 kb on + strand, within GFF380 at 95.910 kb on - strand, within GFF380 at 96.015 kb on + strand, within GFF380 at 96.036 kb on + strand, within GFF380 at 96.050 kb on + strand, within GFF380 at 96.137 kb on + strand, within GFF380 at 96.138 kb on - strand, within GFF380 at 96.139 kb on + strand, within GFF380 at 96.139 kb on + strand, within GFF380 at 96.139 kb on + strand, within GFF380 at 96.139 kb on + strand, within GFF380 at 96.266 kb on + strand at 96.285 kb on + strand at 96.319 kb on + strand at 96.319 kb on + strand at 96.320 kb on - strand at 96.330 kb on + strand at 96.364 kb on + strand at 96.488 kb on + strand, within GFF381 at 96.488 kb on + strand, within GFF381 at 96.533 kb on - strand, within GFF381 at 96.533 kb on - strand, within GFF381 at 96.536 kb on + strand, within GFF381 at 96.537 kb on - strand, within GFF381 at 96.602 kb on + strand, within GFF381 at 96.662 kb on + strand, within GFF381 at 96.663 kb on - strand, within GFF381 at 96.705 kb on + strand, within GFF381 at 96.725 kb on + strand, within GFF381 at 96.776 kb on + strand, within GFF381 at 96.776 kb on + strand, within GFF381
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 94,403 + GFF379 0.20 -0.6 94,543 + GFF379 0.33 +0.0 94,547 - GFF379 0.34 +0.2 94,551 + GFF379 0.34 +0.9 94,614 + GFF379 0.40 +0.4 94,614 + GFF379 0.40 -0.6 94,614 + GFF379 0.40 +0.0 94,615 - GFF379 0.41 -2.9 94,615 - GFF379 0.41 -0.5 94,701 + GFF379 0.49 +0.2 94,701 + GFF379 0.49 -0.7 94,737 - GFF379 0.53 -1.8 94,749 - GFF379 0.54 +0.2 94,769 + GFF379 0.56 -0.2 94,850 + GFF379 0.64 -1.1 94,851 - GFF379 0.64 -0.8 94,973 + GFF379 0.76 +0.3 95,030 - GFF379 0.81 -1.6 95,198 - -1.2 95,239 + -1.6 95,240 - -1.0 95,325 - -3.3 95,417 + GFF380 0.18 -1.3 95,576 + GFF380 0.32 -0.9 95,634 + GFF380 0.37 -1.7 95,635 - GFF380 0.37 -0.9 95,650 + GFF380 0.39 -0.4 95,651 - GFF380 0.39 +0.0 95,909 + GFF380 0.62 -0.2 95,910 - GFF380 0.62 -0.6 96,015 + GFF380 0.71 -0.4 96,036 + GFF380 0.73 -2.9 96,050 + GFF380 0.74 -1.2 96,137 + GFF380 0.82 -0.4 96,138 - GFF380 0.82 -0.5 96,139 + GFF380 0.82 -0.8 96,139 + GFF380 0.82 -0.6 96,139 + GFF380 0.82 -0.4 96,139 + GFF380 0.82 +0.1 96,266 + -1.2 96,285 + -0.4 96,319 + +0.2 96,319 + -0.2 96,320 - -1.7 96,330 + -0.4 96,364 + -1.2 96,488 + GFF381 0.19 -0.3 96,488 + GFF381 0.19 -1.2 96,533 - GFF381 0.25 -0.3 96,533 - GFF381 0.25 -0.7 96,536 + GFF381 0.25 -0.3 96,537 - GFF381 0.26 -0.5 96,602 + GFF381 0.34 -0.2 96,662 + GFF381 0.41 +0.3 96,663 - GFF381 0.41 -1.5 96,705 + GFF381 0.47 -0.6 96,725 + GFF381 0.49 +0.0 96,776 + GFF381 0.56 -1.1 96,776 + GFF381 0.56 -0.4
Or see this region's nucleotide sequence