Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3771 and GFF3772 overlap by 1 nucleotides GFF3772 and GFF3773 are separated by 16 nucleotides GFF3773 and GFF3774 are separated by 64 nucleotides
GFF3771 - Fructose-specific phosphocarrier protein HPr (EC 2.7.1.69) / PTS system, fructose-specific IIA component (EC 2.7.1.69), at 37,497 to 38,627
GFF3771
GFF3772 - 1-phosphofructokinase (EC 2.7.1.56), at 38,627 to 39,565
GFF3772
GFF3773 - PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69), at 39,582 to 41,270
GFF3773
GFF3774 - Endonuclease IV (EC 3.1.21.2), at 41,335 to 42,192
GFF3774
Position (kb) 39
40
41
42 Strain fitness (log2 ratio) -1
0
1 at 38.666 kb on + strand at 39.118 kb on + strand, within GFF3772 at 39.370 kb on - strand, within GFF3772 at 39.446 kb on - strand, within GFF3772 at 39.549 kb on + strand at 39.598 kb on + strand at 39.630 kb on + strand at 39.631 kb on - strand at 40.177 kb on + strand, within GFF3773 at 40.284 kb on + strand, within GFF3773 at 40.284 kb on + strand, within GFF3773 at 40.285 kb on - strand, within GFF3773 at 40.441 kb on - strand, within GFF3773 at 40.563 kb on - strand, within GFF3773 at 40.685 kb on + strand, within GFF3773 at 40.787 kb on + strand, within GFF3773 at 40.787 kb on + strand, within GFF3773 at 40.890 kb on - strand, within GFF3773 at 40.890 kb on - strand, within GFF3773 at 40.890 kb on - strand, within GFF3773 at 41.045 kb on - strand, within GFF3773 at 41.058 kb on - strand, within GFF3773 at 41.160 kb on - strand at 41.160 kb on - strand at 41.451 kb on + strand, within GFF3774 at 41.656 kb on - strand, within GFF3774 at 41.661 kb on + strand, within GFF3774 at 41.682 kb on + strand, within GFF3774 at 41.683 kb on - strand, within GFF3774 at 41.736 kb on + strand, within GFF3774 at 41.800 kb on - strand, within GFF3774 at 41.970 kb on + strand, within GFF3774 at 42.186 kb on - strand at 42.186 kb on - strand at 42.226 kb on + strand at 42.226 kb on + strand at 42.227 kb on - strand at 42.267 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 38,666 + -1.2 39,118 + GFF3772 0.52 -0.3 39,370 - GFF3772 0.79 -0.7 39,446 - GFF3772 0.87 +0.8 39,549 + +0.2 39,598 + +0.2 39,630 + +0.3 39,631 - -0.2 40,177 + GFF3773 0.35 -0.2 40,284 + GFF3773 0.42 -0.0 40,284 + GFF3773 0.42 -0.2 40,285 - GFF3773 0.42 -0.2 40,441 - GFF3773 0.51 +0.2 40,563 - GFF3773 0.58 +0.2 40,685 + GFF3773 0.65 +0.2 40,787 + GFF3773 0.71 +0.2 40,787 + GFF3773 0.71 -0.0 40,890 - GFF3773 0.77 -0.0 40,890 - GFF3773 0.77 +0.2 40,890 - GFF3773 0.77 +0.1 41,045 - GFF3773 0.87 +0.4 41,058 - GFF3773 0.87 +0.2 41,160 - +0.5 41,160 - +0.0 41,451 + GFF3774 0.14 +0.4 41,656 - GFF3774 0.37 -0.5 41,661 + GFF3774 0.38 +0.3 41,682 + GFF3774 0.40 +1.1 41,683 - GFF3774 0.41 +0.1 41,736 + GFF3774 0.47 +0.1 41,800 - GFF3774 0.54 +0.0 41,970 + GFF3774 0.74 -0.5 42,186 - +0.3 42,186 - +0.4 42,226 + +0.1 42,226 + +0.3 42,227 - +0.6 42,267 + -0.5
Or see this region's nucleotide sequence