Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3704 and GFF3705 are separated by 298 nucleotides GFF3705 and GFF3706 are separated by 276 nucleotides GFF3706 and GFF3707 are separated by 108 nucleotides
GFF3704 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 8,883 to 11,390
GFF3704
GFF3705 - TsgA protein homolog, at 11,689 to 12,870
GFF3705
GFF3706 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 13,147 to 13,719
GFF3706
GFF3707 - FIG00639558: hypothetical protein, at 13,828 to 13,995
GFF3707
Position (kb) 11
12
13 Strain fitness (log2 ratio) -1
0
1
2 at 10.701 kb on - strand, within GFF3704 at 11.177 kb on + strand at 11.206 kb on - strand at 11.272 kb on + strand at 11.405 kb on + strand at 11.597 kb on + strand at 11.688 kb on - strand at 11.728 kb on + strand at 11.925 kb on + strand, within GFF3705 at 11.925 kb on + strand, within GFF3705 at 11.938 kb on - strand, within GFF3705 at 11.939 kb on + strand, within GFF3705 at 11.939 kb on + strand, within GFF3705 at 11.940 kb on - strand, within GFF3705 at 11.940 kb on - strand, within GFF3705 at 11.985 kb on + strand, within GFF3705 at 11.986 kb on - strand, within GFF3705 at 12.014 kb on + strand, within GFF3705 at 12.108 kb on + strand, within GFF3705 at 12.109 kb on - strand, within GFF3705 at 12.109 kb on - strand, within GFF3705 at 12.109 kb on - strand, within GFF3705 at 12.110 kb on + strand, within GFF3705 at 12.110 kb on + strand, within GFF3705 at 12.111 kb on - strand, within GFF3705 at 12.196 kb on - strand, within GFF3705 at 12.202 kb on + strand, within GFF3705 at 12.203 kb on - strand, within GFF3705 at 12.218 kb on + strand, within GFF3705 at 12.374 kb on + strand, within GFF3705 at 12.375 kb on - strand, within GFF3705 at 12.396 kb on + strand, within GFF3705 at 12.397 kb on - strand, within GFF3705 at 12.397 kb on - strand, within GFF3705 at 12.507 kb on + strand, within GFF3705 at 12.643 kb on + strand, within GFF3705 at 12.723 kb on + strand, within GFF3705 at 12.864 kb on + strand at 12.952 kb on - strand at 13.054 kb on - strand at 13.056 kb on - strand at 13.059 kb on + strand at 13.120 kb on + strand at 13.464 kb on + strand, within GFF3706 at 13.612 kb on - strand, within GFF3706 at 13.788 kb on + strand at 13.791 kb on - strand at 13.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 10,701 - GFF3704 0.72 -0.1 11,177 + +0.1 11,206 - -0.1 11,272 + -0.3 11,405 + +0.4 11,597 + -0.8 11,688 - +0.1 11,728 + -0.8 11,925 + GFF3705 0.20 +0.9 11,925 + GFF3705 0.20 -0.1 11,938 - GFF3705 0.21 -0.8 11,939 + GFF3705 0.21 +0.1 11,939 + GFF3705 0.21 -0.5 11,940 - GFF3705 0.21 +1.2 11,940 - GFF3705 0.21 -0.1 11,985 + GFF3705 0.25 -0.5 11,986 - GFF3705 0.25 +0.2 12,014 + GFF3705 0.27 +0.1 12,108 + GFF3705 0.35 +0.0 12,109 - GFF3705 0.36 -0.3 12,109 - GFF3705 0.36 +0.5 12,109 - GFF3705 0.36 -0.0 12,110 + GFF3705 0.36 +0.9 12,110 + GFF3705 0.36 +0.1 12,111 - GFF3705 0.36 +0.0 12,196 - GFF3705 0.43 +1.9 12,202 + GFF3705 0.43 +1.0 12,203 - GFF3705 0.43 +0.3 12,218 + GFF3705 0.45 +0.5 12,374 + GFF3705 0.58 +0.2 12,375 - GFF3705 0.58 +0.3 12,396 + GFF3705 0.60 +0.8 12,397 - GFF3705 0.60 +0.1 12,397 - GFF3705 0.60 +0.3 12,507 + GFF3705 0.69 +0.1 12,643 + GFF3705 0.81 -0.5 12,723 + GFF3705 0.87 +0.7 12,864 + +0.2 12,952 - -0.5 13,054 - -0.0 13,056 - +0.0 13,059 + +0.2 13,120 + -0.0 13,464 + GFF3706 0.55 +0.7 13,612 - GFF3706 0.81 +0.0 13,788 + -0.4 13,791 - -1.0 13,791 - +0.4
Or see this region's nucleotide sequence