Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3692 and GFF3693 are separated by 72 nucleotides GFF3693 and GFF3694 are separated by 13 nucleotides GFF3694 and GFF3695 are separated by 77 nucleotides
GFF3692 - Threonine dehydratase (EC 4.3.1.19), at 45,458 to 46,672
GFF3692
GFF3693 - FIG01045169: hypothetical protein, at 46,745 to 46,903
GFF3693
GFF3694 - Putative ion:amino acid symporter, at 46,917 to 48,353
GFF3694
GFF3695 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 48,431 to 49,633
GFF3695
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -1
0
1 at 45.975 kb on - strand, within GFF3692 at 46.088 kb on + strand, within GFF3692 at 46.441 kb on + strand, within GFF3692 at 47.670 kb on + strand, within GFF3694 at 47.784 kb on - strand, within GFF3694 at 47.797 kb on + strand, within GFF3694 at 47.804 kb on + strand, within GFF3694 at 47.804 kb on + strand, within GFF3694 at 47.858 kb on - strand, within GFF3694 at 47.902 kb on + strand, within GFF3694 at 48.311 kb on + strand at 48.373 kb on + strand at 48.432 kb on + strand at 48.443 kb on - strand at 48.443 kb on - strand at 48.565 kb on + strand, within GFF3695 at 48.853 kb on + strand, within GFF3695 at 48.853 kb on + strand, within GFF3695 at 49.071 kb on - strand, within GFF3695 at 49.178 kb on - strand, within GFF3695 at 49.277 kb on - strand, within GFF3695 at 49.277 kb on - strand, within GFF3695 at 49.310 kb on - strand, within GFF3695 at 49.310 kb on - strand, within GFF3695
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 45,975 - GFF3692 0.43 +0.7 46,088 + GFF3692 0.52 +0.0 46,441 + GFF3692 0.81 +0.3 47,670 + GFF3694 0.52 +0.4 47,784 - GFF3694 0.60 +0.3 47,797 + GFF3694 0.61 -0.1 47,804 + GFF3694 0.62 +0.3 47,804 + GFF3694 0.62 +0.4 47,858 - GFF3694 0.65 +0.8 47,902 + GFF3694 0.69 +0.4 48,311 + -1.0 48,373 + +0.5 48,432 + -0.8 48,443 - +0.4 48,443 - -1.5 48,565 + GFF3695 0.11 +0.2 48,853 + GFF3695 0.35 +0.6 48,853 + GFF3695 0.35 +0.6 49,071 - GFF3695 0.53 -0.8 49,178 - GFF3695 0.62 +0.0 49,277 - GFF3695 0.70 -0.0 49,277 - GFF3695 0.70 -0.4 49,310 - GFF3695 0.73 +0.3 49,310 - GFF3695 0.73 -0.3
Or see this region's nucleotide sequence