Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3655 and GFF3656 are separated by 292 nucleotides GFF3656 and GFF3657 are separated by 9 nucleotides GFF3657 and GFF3658 are separated by 136 nucleotides GFF3658 and GFF3659 are separated by 283 nucleotides
GFF3655 - Probable transport protein, at 2,574 to 3,995
GFF3655
GFF3656 - Pyruvate formate-lyase activating enzyme (EC 1.97.1.4), at 4,288 to 4,935
GFF3656
GFF3657 - hypothetical protein, at 4,945 to 5,076
GFF3657
GFF3658 - FIG01046987: hypothetical protein, at 5,213 to 5,377
GFF3658
GFF3659 - FIG01045244: hypothetical protein, at 5,661 to 6,620
GFF3659
Position (kb) 4
5 Strain fitness (log2 ratio) -1
0
1 at 3.399 kb on + strand, within GFF3655 at 3.399 kb on + strand, within GFF3655 at 3.427 kb on - strand, within GFF3655 at 3.549 kb on + strand, within GFF3655 at 3.565 kb on + strand, within GFF3655 at 3.566 kb on - strand, within GFF3655 at 3.692 kb on + strand, within GFF3655 at 3.787 kb on - strand, within GFF3655 at 3.829 kb on + strand, within GFF3655 at 3.830 kb on - strand, within GFF3655 at 3.830 kb on - strand, within GFF3655 at 4.081 kb on - strand at 4.167 kb on + strand at 4.293 kb on - strand at 4.354 kb on - strand, within GFF3656 at 4.405 kb on - strand, within GFF3656 at 4.425 kb on - strand, within GFF3656 at 4.452 kb on + strand, within GFF3656 at 4.563 kb on - strand, within GFF3656 at 4.842 kb on - strand, within GFF3656 at 4.861 kb on + strand, within GFF3656 at 4.862 kb on - strand, within GFF3656 at 5.247 kb on - strand, within GFF3658 at 5.247 kb on - strand, within GFF3658 at 5.247 kb on - strand, within GFF3658 at 5.355 kb on + strand, within GFF3658 at 5.366 kb on + strand at 5.367 kb on - strand at 5.367 kb on - strand at 5.755 kb on + strand at 5.755 kb on + strand at 5.874 kb on - strand, within GFF3659
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 3,399 + GFF3655 0.58 +0.6 3,399 + GFF3655 0.58 +0.1 3,427 - GFF3655 0.60 -0.1 3,549 + GFF3655 0.69 -0.1 3,565 + GFF3655 0.70 +0.1 3,566 - GFF3655 0.70 -0.5 3,692 + GFF3655 0.79 -1.0 3,787 - GFF3655 0.85 +0.3 3,829 + GFF3655 0.88 +0.6 3,830 - GFF3655 0.88 -0.7 3,830 - GFF3655 0.88 -0.1 4,081 - +0.5 4,167 + +0.1 4,293 - -0.0 4,354 - GFF3656 0.10 -0.7 4,405 - GFF3656 0.18 -0.5 4,425 - GFF3656 0.21 -0.5 4,452 + GFF3656 0.25 -0.4 4,563 - GFF3656 0.42 -0.9 4,842 - GFF3656 0.85 -0.1 4,861 + GFF3656 0.88 -0.6 4,862 - GFF3656 0.89 -0.3 5,247 - GFF3658 0.21 -1.7 5,247 - GFF3658 0.21 -0.0 5,247 - GFF3658 0.21 -0.3 5,355 + GFF3658 0.86 -0.9 5,366 + +0.4 5,367 - +0.4 5,367 - +0.6 5,755 + +0.7 5,755 + -0.1 5,874 - GFF3659 0.22 +0.6
Or see this region's nucleotide sequence