Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3629 and GFF3630 overlap by 1 nucleotides GFF3630 and GFF3631 are separated by 2 nucleotides GFF3631 and GFF3632 are separated by 353 nucleotides GFF3632 and GFF3633 are separated by 47 nucleotides
GFF3629 - FIG01045166: hypothetical protein, at 378,600 to 380,639
GFF3629
GFF3630 - Putative membrane protein, at 380,639 to 381,499
GFF3630
GFF3631 - hypothetical protein, at 381,502 to 381,693
GFF3631
GFF3632 - Transcriptional regulator SlyA, at 382,047 to 382,373
GFF3632
GFF3633 - Outer membrane lipoprotein pcp precursor, at 382,421 to 382,888
GFF3633
Position (kb) 380
381
382 Strain fitness (log2 ratio) -1
0
1
2 at 379.671 kb on + strand, within GFF3629 at 379.672 kb on - strand, within GFF3629 at 379.769 kb on - strand, within GFF3629 at 379.905 kb on + strand, within GFF3629 at 379.917 kb on + strand, within GFF3629 at 380.033 kb on + strand, within GFF3629 at 380.182 kb on - strand, within GFF3629 at 380.221 kb on - strand, within GFF3629 at 380.228 kb on + strand, within GFF3629 at 380.282 kb on - strand, within GFF3629 at 380.350 kb on - strand, within GFF3629 at 380.388 kb on - strand, within GFF3629 at 380.448 kb on + strand at 380.522 kb on - strand at 380.524 kb on + strand at 380.598 kb on - strand at 380.669 kb on - strand at 380.720 kb on + strand at 380.721 kb on - strand at 380.809 kb on - strand, within GFF3630 at 380.862 kb on + strand, within GFF3630 at 380.862 kb on + strand, within GFF3630 at 380.863 kb on - strand, within GFF3630 at 380.947 kb on + strand, within GFF3630 at 380.972 kb on - strand, within GFF3630 at 381.095 kb on + strand, within GFF3630 at 381.095 kb on + strand, within GFF3630 at 381.116 kb on - strand, within GFF3630 at 381.413 kb on - strand, within GFF3630 at 381.414 kb on + strand at 381.414 kb on + strand at 381.415 kb on - strand at 381.535 kb on + strand, within GFF3631 at 381.566 kb on - strand, within GFF3631 at 381.729 kb on + strand at 381.795 kb on + strand at 381.816 kb on - strand at 381.816 kb on - strand at 382.129 kb on + strand, within GFF3632 at 382.208 kb on + strand, within GFF3632 at 382.263 kb on - strand, within GFF3632 at 382.386 kb on + strand at 382.411 kb on - strand at 382.411 kb on - strand at 382.493 kb on - strand, within GFF3633
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 379,671 + GFF3629 0.53 +0.3 379,672 - GFF3629 0.53 +0.1 379,769 - GFF3629 0.57 +0.2 379,905 + GFF3629 0.64 -0.2 379,917 + GFF3629 0.65 +2.1 380,033 + GFF3629 0.70 +1.3 380,182 - GFF3629 0.78 +0.2 380,221 - GFF3629 0.79 -0.1 380,228 + GFF3629 0.80 +0.5 380,282 - GFF3629 0.82 -0.2 380,350 - GFF3629 0.86 -0.2 380,388 - GFF3629 0.88 +0.3 380,448 + -0.2 380,522 - -0.1 380,524 + +0.3 380,598 - +0.5 380,669 - +0.1 380,720 + +0.3 380,721 - -0.4 380,809 - GFF3630 0.20 +0.2 380,862 + GFF3630 0.26 -0.4 380,862 + GFF3630 0.26 +0.8 380,863 - GFF3630 0.26 -0.1 380,947 + GFF3630 0.36 -0.0 380,972 - GFF3630 0.39 -0.1 381,095 + GFF3630 0.53 +1.9 381,095 + GFF3630 0.53 -0.1 381,116 - GFF3630 0.55 +0.4 381,413 - GFF3630 0.90 -0.8 381,414 + +1.2 381,414 + +0.4 381,415 - +1.2 381,535 + GFF3631 0.17 -0.2 381,566 - GFF3631 0.33 +0.7 381,729 + +0.3 381,795 + +0.3 381,816 - +0.1 381,816 - +0.1 382,129 + GFF3632 0.25 +1.9 382,208 + GFF3632 0.49 -0.4 382,263 - GFF3632 0.66 -0.4 382,386 + +0.8 382,411 - -1.5 382,411 - +0.9 382,493 - GFF3633 0.15 +0.3
Or see this region's nucleotide sequence