Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3627 and GFF3628 are separated by 79 nucleotides GFF3628 and GFF3629 overlap by 25 nucleotides GFF3629 and GFF3630 overlap by 1 nucleotides GFF3630 and GFF3631 are separated by 2 nucleotides
GFF3627 - Putative aldo/keto reductase, at 377,127 to 378,023
GFF3627
GFF3628 - Superoxide dismutase [Cu-Zn] precursor (EC 1.15.1.1), at 378,103 to 378,624
GFF3628
GFF3629 - FIG01045166: hypothetical protein, at 378,600 to 380,639
GFF3629
GFF3630 - Putative membrane protein, at 380,639 to 381,499
GFF3630
GFF3631 - hypothetical protein, at 381,502 to 381,693
GFF3631
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -1
0
1
2 at 377.713 kb on + strand, within GFF3627 at 377.713 kb on + strand, within GFF3627 at 377.723 kb on - strand, within GFF3627 at 377.849 kb on + strand, within GFF3627 at 377.865 kb on + strand, within GFF3627 at 378.449 kb on + strand, within GFF3628 at 378.459 kb on + strand, within GFF3628 at 378.460 kb on - strand, within GFF3628 at 378.756 kb on + strand at 378.766 kb on - strand at 378.830 kb on + strand, within GFF3629 at 378.831 kb on - strand, within GFF3629 at 378.831 kb on - strand, within GFF3629 at 378.930 kb on + strand, within GFF3629 at 378.931 kb on - strand, within GFF3629 at 378.931 kb on - strand, within GFF3629 at 378.931 kb on - strand, within GFF3629 at 378.988 kb on + strand, within GFF3629 at 378.989 kb on - strand, within GFF3629 at 378.989 kb on - strand, within GFF3629 at 379.232 kb on + strand, within GFF3629 at 379.259 kb on + strand, within GFF3629 at 379.394 kb on + strand, within GFF3629 at 379.394 kb on + strand, within GFF3629 at 379.608 kb on - strand, within GFF3629 at 379.671 kb on + strand, within GFF3629 at 379.672 kb on - strand, within GFF3629 at 379.769 kb on - strand, within GFF3629 at 379.905 kb on + strand, within GFF3629 at 379.917 kb on + strand, within GFF3629 at 380.033 kb on + strand, within GFF3629 at 380.182 kb on - strand, within GFF3629 at 380.221 kb on - strand, within GFF3629 at 380.228 kb on + strand, within GFF3629 at 380.282 kb on - strand, within GFF3629 at 380.350 kb on - strand, within GFF3629 at 380.388 kb on - strand, within GFF3629 at 380.448 kb on + strand at 380.522 kb on - strand at 380.524 kb on + strand at 380.598 kb on - strand at 380.669 kb on - strand at 380.720 kb on + strand at 380.721 kb on - strand at 380.809 kb on - strand, within GFF3630 at 380.862 kb on + strand, within GFF3630 at 380.862 kb on + strand, within GFF3630 at 380.863 kb on - strand, within GFF3630 at 380.947 kb on + strand, within GFF3630 at 380.972 kb on - strand, within GFF3630 at 381.095 kb on + strand, within GFF3630 at 381.095 kb on + strand, within GFF3630 at 381.116 kb on - strand, within GFF3630 at 381.413 kb on - strand, within GFF3630 at 381.414 kb on + strand at 381.414 kb on + strand at 381.415 kb on - strand at 381.535 kb on + strand, within GFF3631 at 381.566 kb on - strand, within GFF3631
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 377,713 + GFF3627 0.65 -0.2 377,713 + GFF3627 0.65 -0.5 377,723 - GFF3627 0.66 +0.7 377,849 + GFF3627 0.80 -0.3 377,865 + GFF3627 0.82 -0.3 378,449 + GFF3628 0.66 -0.0 378,459 + GFF3628 0.68 +0.1 378,460 - GFF3628 0.68 +0.0 378,756 + +0.5 378,766 - -0.0 378,830 + GFF3629 0.11 -0.4 378,831 - GFF3629 0.11 +0.3 378,831 - GFF3629 0.11 +0.2 378,930 + GFF3629 0.16 +0.3 378,931 - GFF3629 0.16 -0.1 378,931 - GFF3629 0.16 +0.6 378,931 - GFF3629 0.16 +0.5 378,988 + GFF3629 0.19 -0.1 378,989 - GFF3629 0.19 +0.5 378,989 - GFF3629 0.19 +0.2 379,232 + GFF3629 0.31 -0.3 379,259 + GFF3629 0.32 +0.1 379,394 + GFF3629 0.39 +0.7 379,394 + GFF3629 0.39 +0.5 379,608 - GFF3629 0.49 -0.7 379,671 + GFF3629 0.53 +0.3 379,672 - GFF3629 0.53 +0.1 379,769 - GFF3629 0.57 +0.2 379,905 + GFF3629 0.64 -0.2 379,917 + GFF3629 0.65 +2.1 380,033 + GFF3629 0.70 +1.3 380,182 - GFF3629 0.78 +0.2 380,221 - GFF3629 0.79 -0.1 380,228 + GFF3629 0.80 +0.5 380,282 - GFF3629 0.82 -0.2 380,350 - GFF3629 0.86 -0.2 380,388 - GFF3629 0.88 +0.3 380,448 + -0.2 380,522 - -0.1 380,524 + +0.3 380,598 - +0.5 380,669 - +0.1 380,720 + +0.3 380,721 - -0.4 380,809 - GFF3630 0.20 +0.2 380,862 + GFF3630 0.26 -0.4 380,862 + GFF3630 0.26 +0.8 380,863 - GFF3630 0.26 -0.1 380,947 + GFF3630 0.36 -0.0 380,972 - GFF3630 0.39 -0.1 381,095 + GFF3630 0.53 +1.9 381,095 + GFF3630 0.53 -0.1 381,116 - GFF3630 0.55 +0.4 381,413 - GFF3630 0.90 -0.8 381,414 + +1.2 381,414 + +0.4 381,415 - +1.2 381,535 + GFF3631 0.17 -0.2 381,566 - GFF3631 0.33 +0.7
Or see this region's nucleotide sequence