Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3573 and GFF3574 are separated by 0 nucleotides GFF3574 and GFF3575 are separated by 181 nucleotides GFF3575 and GFF3576 overlap by 26 nucleotides GFF3576 and GFF3577 are separated by 97 nucleotides
GFF3573 - Tetrathionate reductase subunit C, at 331,463 to 332,485
GFF3573
GFF3574 - Tetrathionate reductase subunit B, at 332,486 to 333,220
GFF3574
GFF3575 - Tetrathionate reductase sensory transduction histidine kinase, at 333,402 to 335,180
GFF3575
GFF3576 - Tetrathionate reductase two-component response regulator, at 335,155 to 335,775
GFF3576
GFF3577 - FIG00637899: hypothetical protein, at 335,873 to 336,085
GFF3577
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -2
-1
0
1 at 332.434 kb on + strand at 332.435 kb on - strand at 332.435 kb on - strand at 332.560 kb on - strand, within GFF3574 at 332.595 kb on - strand, within GFF3574 at 332.660 kb on - strand, within GFF3574 at 332.790 kb on + strand, within GFF3574 at 332.791 kb on - strand, within GFF3574 at 333.080 kb on - strand, within GFF3574 at 333.090 kb on + strand, within GFF3574 at 333.451 kb on + strand at 333.486 kb on - strand at 333.553 kb on + strand at 333.743 kb on + strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.744 kb on - strand, within GFF3575 at 333.864 kb on + strand, within GFF3575 at 333.866 kb on + strand, within GFF3575 at 333.866 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.948 kb on + strand, within GFF3575 at 333.949 kb on - strand, within GFF3575 at 334.007 kb on + strand, within GFF3575 at 334.099 kb on - strand, within GFF3575 at 334.420 kb on + strand, within GFF3575 at 334.421 kb on - strand, within GFF3575 at 334.508 kb on + strand, within GFF3575 at 334.970 kb on - strand, within GFF3575 at 334.972 kb on + strand, within GFF3575 at 335.134 kb on + strand at 335.185 kb on - strand at 335.300 kb on + strand, within GFF3576 at 335.408 kb on + strand, within GFF3576 at 335.542 kb on - strand, within GFF3576 at 335.543 kb on + strand, within GFF3576 at 335.543 kb on + strand, within GFF3576 at 335.655 kb on - strand, within GFF3576 at 335.765 kb on - strand at 336.049 kb on + strand, within GFF3577 at 336.049 kb on + strand, within GFF3577
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 332,434 + -0.4 332,435 - -0.1 332,435 - -0.1 332,560 - GFF3574 0.10 -1.0 332,595 - GFF3574 0.15 -1.8 332,660 - GFF3574 0.24 -0.1 332,790 + GFF3574 0.41 +0.3 332,791 - GFF3574 0.41 -0.7 333,080 - GFF3574 0.81 +0.4 333,090 + GFF3574 0.82 +0.3 333,451 + -0.0 333,486 - -0.5 333,553 + +0.0 333,743 + GFF3575 0.19 +0.5 333,744 - GFF3575 0.19 +0.3 333,744 - GFF3575 0.19 +0.1 333,744 - GFF3575 0.19 -0.6 333,864 + GFF3575 0.26 +0.6 333,866 + GFF3575 0.26 -0.3 333,866 + GFF3575 0.26 +0.7 333,948 + GFF3575 0.31 +0.7 333,948 + GFF3575 0.31 -0.1 333,948 + GFF3575 0.31 +0.4 333,949 - GFF3575 0.31 +0.4 334,007 + GFF3575 0.34 -0.8 334,099 - GFF3575 0.39 +0.7 334,420 + GFF3575 0.57 +0.4 334,421 - GFF3575 0.57 -1.2 334,508 + GFF3575 0.62 +0.6 334,970 - GFF3575 0.88 +0.9 334,972 + GFF3575 0.88 +0.1 335,134 + +1.0 335,185 - -1.1 335,300 + GFF3576 0.23 +0.5 335,408 + GFF3576 0.41 -0.0 335,542 - GFF3576 0.62 -0.4 335,543 + GFF3576 0.62 -0.3 335,543 + GFF3576 0.62 -0.0 335,655 - GFF3576 0.81 -1.9 335,765 - +0.3 336,049 + GFF3577 0.83 -0.6 336,049 + GFF3577 0.83 -0.3
Or see this region's nucleotide sequence