Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3561 and GFF3562 overlap by 4 nucleotides GFF3562 and GFF3563 are separated by 12 nucleotides GFF3563 and GFF3564 are separated by 154 nucleotides
GFF3561 - Iron-sulfur cluster assembly protein SufD, at 316,970 to 318,241
GFF3561
GFF3562 - Cysteine desulfurase (EC 2.8.1.7), SufS subfamily, at 318,238 to 319,458
GFF3562
GFF3563 - Sulfur acceptor protein SufE for iron-sulfur cluster assembly, at 319,471 to 319,887
GFF3563
GFF3564 - L,D-transpeptidase YnhG, at 320,042 to 321,043
GFF3564
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1 at 317.266 kb on + strand, within GFF3561 at 317.384 kb on + strand, within GFF3561 at 317.384 kb on + strand, within GFF3561 at 317.384 kb on + strand, within GFF3561 at 317.384 kb on + strand, within GFF3561 at 317.385 kb on - strand, within GFF3561 at 317.388 kb on + strand, within GFF3561 at 317.388 kb on + strand, within GFF3561 at 317.388 kb on + strand, within GFF3561 at 317.389 kb on - strand, within GFF3561 at 317.431 kb on - strand, within GFF3561 at 317.437 kb on + strand, within GFF3561 at 317.546 kb on - strand, within GFF3561 at 317.546 kb on - strand, within GFF3561 at 317.727 kb on + strand, within GFF3561 at 317.728 kb on - strand, within GFF3561 at 317.782 kb on + strand, within GFF3561 at 317.783 kb on - strand, within GFF3561 at 317.839 kb on + strand, within GFF3561 at 317.839 kb on + strand, within GFF3561 at 317.854 kb on + strand, within GFF3561 at 317.854 kb on + strand, within GFF3561 at 318.024 kb on - strand, within GFF3561 at 318.068 kb on - strand, within GFF3561 at 318.314 kb on - strand at 318.346 kb on - strand at 318.376 kb on + strand, within GFF3562 at 318.474 kb on + strand, within GFF3562 at 318.585 kb on + strand, within GFF3562 at 318.687 kb on + strand, within GFF3562 at 318.688 kb on - strand, within GFF3562 at 318.707 kb on + strand, within GFF3562 at 319.137 kb on + strand, within GFF3562 at 319.213 kb on + strand, within GFF3562 at 319.214 kb on - strand, within GFF3562 at 319.293 kb on + strand, within GFF3562 at 319.391 kb on - strand at 319.391 kb on - strand at 319.391 kb on - strand at 319.507 kb on - strand at 319.548 kb on + strand, within GFF3563 at 319.548 kb on + strand, within GFF3563 at 319.548 kb on + strand, within GFF3563 at 319.725 kb on - strand, within GFF3563 at 319.735 kb on + strand, within GFF3563 at 319.736 kb on - strand, within GFF3563 at 320.166 kb on - strand, within GFF3564 at 320.167 kb on + strand, within GFF3564 at 320.200 kb on + strand, within GFF3564 at 320.269 kb on + strand, within GFF3564 at 320.287 kb on + strand, within GFF3564 at 320.308 kb on - strand, within GFF3564 at 320.335 kb on + strand, within GFF3564 at 320.364 kb on - strand, within GFF3564 at 320.366 kb on + strand, within GFF3564 at 320.392 kb on - strand, within GFF3564 at 320.399 kb on + strand, within GFF3564
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 317,266 + GFF3561 0.23 +0.4 317,384 + GFF3561 0.33 -0.5 317,384 + GFF3561 0.33 -0.3 317,384 + GFF3561 0.33 +0.0 317,384 + GFF3561 0.33 +0.1 317,385 - GFF3561 0.33 -0.2 317,388 + GFF3561 0.33 -0.5 317,388 + GFF3561 0.33 -0.2 317,388 + GFF3561 0.33 +0.2 317,389 - GFF3561 0.33 -0.6 317,431 - GFF3561 0.36 -0.3 317,437 + GFF3561 0.37 +0.1 317,546 - GFF3561 0.45 +0.0 317,546 - GFF3561 0.45 -0.1 317,727 + GFF3561 0.60 +0.8 317,728 - GFF3561 0.60 +0.0 317,782 + GFF3561 0.64 -0.0 317,783 - GFF3561 0.64 +0.5 317,839 + GFF3561 0.68 +0.1 317,839 + GFF3561 0.68 -0.5 317,854 + GFF3561 0.69 +0.3 317,854 + GFF3561 0.69 +0.9 318,024 - GFF3561 0.83 -0.4 318,068 - GFF3561 0.86 +0.4 318,314 - -0.3 318,346 - +0.5 318,376 + GFF3562 0.11 -0.8 318,474 + GFF3562 0.19 -0.2 318,585 + GFF3562 0.28 +0.0 318,687 + GFF3562 0.37 -1.3 318,688 - GFF3562 0.37 -0.2 318,707 + GFF3562 0.38 -1.1 319,137 + GFF3562 0.74 -0.2 319,213 + GFF3562 0.80 -0.2 319,214 - GFF3562 0.80 +0.1 319,293 + GFF3562 0.86 -1.1 319,391 - +0.1 319,391 - +0.6 319,391 - -0.2 319,507 - +0.3 319,548 + GFF3563 0.18 +0.7 319,548 + GFF3563 0.18 -0.1 319,548 + GFF3563 0.18 -0.1 319,725 - GFF3563 0.61 +0.3 319,735 + GFF3563 0.63 -2.2 319,736 - GFF3563 0.64 +0.4 320,166 - GFF3564 0.12 -0.3 320,167 + GFF3564 0.12 -0.0 320,200 + GFF3564 0.16 +0.2 320,269 + GFF3564 0.23 +0.1 320,287 + GFF3564 0.24 +1.5 320,308 - GFF3564 0.27 +0.4 320,335 + GFF3564 0.29 +0.2 320,364 - GFF3564 0.32 +0.1 320,366 + GFF3564 0.32 +0.1 320,392 - GFF3564 0.35 -0.3 320,399 + GFF3564 0.36 -0.5
Or see this region's nucleotide sequence