Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3466 and GFF3467 overlap by 21 nucleotides GFF3467 and GFF3468 are separated by 1 nucleotides GFF3468 and GFF3469 are separated by 30 nucleotides GFF3469 and GFF3470 overlap by 4 nucleotides GFF3470 and GFF3471 are separated by 40 nucleotides
GFF3466 - Transcriptional regulator, AraC family, at 218,240 to 219,034
GFF3466
GFF3467 - Putative inner membrane protein, at 219,014 to 219,460
GFF3467
GFF3468 - hypothetical protein, at 219,462 to 219,599
GFF3468
GFF3469 - hypothetical protein, at 219,630 to 219,773
GFF3469
GFF3470 - Uncharacterized protein YeaK, at 219,770 to 220,297
GFF3470
GFF3471 - Putative two-component response regulator and GGDEF family protein YeaJ, at 220,338 to 221,831
GFF3471
Position (kb) 219
220
221 Strain fitness (log2 ratio) -2
-1
0
1 at 218.905 kb on + strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.905 kb on + strand, within GFF3466 at 218.906 kb on - strand, within GFF3466 at 219.033 kb on - strand at 219.151 kb on + strand, within GFF3467 at 219.365 kb on - strand, within GFF3467 at 219.618 kb on + strand at 219.665 kb on + strand, within GFF3469 at 219.666 kb on - strand, within GFF3469 at 219.666 kb on - strand, within GFF3469 at 219.666 kb on - strand, within GFF3469 at 219.702 kb on - strand, within GFF3469 at 219.834 kb on + strand, within GFF3470 at 219.851 kb on - strand, within GFF3470 at 220.164 kb on - strand, within GFF3470 at 220.340 kb on - strand at 220.431 kb on - strand at 220.604 kb on + strand, within GFF3471 at 221.244 kb on + strand, within GFF3471
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 218,905 + GFF3466 0.84 -0.2 218,905 + GFF3466 0.84 +0.5 218,905 + GFF3466 0.84 -0.6 218,905 + GFF3466 0.84 +0.2 218,906 - GFF3466 0.84 -0.8 219,033 - -0.2 219,151 + GFF3467 0.31 -0.4 219,365 - GFF3467 0.79 +0.2 219,618 + -0.2 219,665 + GFF3469 0.24 -1.6 219,666 - GFF3469 0.25 -0.3 219,666 - GFF3469 0.25 +0.2 219,666 - GFF3469 0.25 -0.9 219,702 - GFF3469 0.50 -0.1 219,834 + GFF3470 0.12 -0.4 219,851 - GFF3470 0.15 -0.5 220,164 - GFF3470 0.75 +0.1 220,340 - +0.0 220,431 - -2.0 220,604 + GFF3471 0.18 +1.1 221,244 + GFF3471 0.61 +0.0
Or see this region's nucleotide sequence