Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3440 and GFF3441 overlap by 1 nucleotides GFF3441 and GFF3442 overlap by 11 nucleotides GFF3442 and GFF3443 overlap by 7 nucleotides
GFF3440 - Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3), at 201,175 to 202,809
GFF3440
GFF3441 - Nickel transport system permease protein nikB2 (TC 3.A.1.5.3), at 202,809 to 203,783
GFF3441
GFF3442 - Nickel transport system permease protein nikC2 (TC 3.A.1.5.3), at 203,773 to 204,585
GFF3442
GFF3443 - Nickel transport ATP-binding protein nikD2 (TC 3.A.1.5.3), at 204,579 to 205,376
GFF3443
Position (kb) 202
203
204 Strain fitness (log2 ratio) -1
0
1 at 201.811 kb on - strand, within GFF3440 at 201.933 kb on + strand, within GFF3440 at 201.934 kb on - strand, within GFF3440 at 201.934 kb on - strand, within GFF3440 at 201.963 kb on + strand, within GFF3440 at 202.114 kb on - strand, within GFF3440 at 202.159 kb on + strand, within GFF3440 at 202.162 kb on - strand, within GFF3440 at 202.499 kb on - strand, within GFF3440 at 202.528 kb on + strand, within GFF3440 at 202.528 kb on + strand, within GFF3440 at 202.583 kb on + strand, within GFF3440 at 202.583 kb on + strand, within GFF3440 at 202.584 kb on - strand, within GFF3440 at 202.702 kb on - strand at 202.705 kb on + strand at 202.705 kb on + strand at 202.886 kb on + strand at 202.920 kb on - strand, within GFF3441 at 203.227 kb on + strand, within GFF3441 at 203.228 kb on - strand, within GFF3441 at 203.297 kb on - strand, within GFF3441 at 203.384 kb on - strand, within GFF3441 at 203.392 kb on + strand, within GFF3441 at 203.393 kb on - strand, within GFF3441 at 203.510 kb on - strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.524 kb on + strand, within GFF3441 at 203.525 kb on - strand, within GFF3441 at 203.554 kb on + strand, within GFF3441 at 203.689 kb on + strand at 203.701 kb on + strand at 203.701 kb on + strand at 203.702 kb on - strand at 203.705 kb on - strand at 203.705 kb on - strand at 203.821 kb on - strand at 203.951 kb on + strand, within GFF3442 at 204.293 kb on - strand, within GFF3442 at 204.491 kb on + strand, within GFF3442 at 204.503 kb on + strand, within GFF3442 at 204.655 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 201,811 - GFF3440 0.39 +0.1 201,933 + GFF3440 0.46 -0.0 201,934 - GFF3440 0.46 -0.2 201,934 - GFF3440 0.46 -0.3 201,963 + GFF3440 0.48 -0.8 202,114 - GFF3440 0.57 +0.4 202,159 + GFF3440 0.60 -0.3 202,162 - GFF3440 0.60 +0.0 202,499 - GFF3440 0.81 +1.0 202,528 + GFF3440 0.83 -0.1 202,528 + GFF3440 0.83 +1.0 202,583 + GFF3440 0.86 -0.4 202,583 + GFF3440 0.86 +0.4 202,584 - GFF3440 0.86 -0.2 202,702 - -0.4 202,705 + +0.0 202,705 + +0.2 202,886 + +0.9 202,920 - GFF3441 0.11 -0.0 203,227 + GFF3441 0.43 -0.5 203,228 - GFF3441 0.43 +0.8 203,297 - GFF3441 0.50 -0.4 203,384 - GFF3441 0.59 -0.3 203,392 + GFF3441 0.60 +0.3 203,393 - GFF3441 0.60 -0.7 203,510 - GFF3441 0.72 -0.4 203,524 + GFF3441 0.73 -0.6 203,524 + GFF3441 0.73 +1.7 203,524 + GFF3441 0.73 +0.2 203,524 + GFF3441 0.73 -0.8 203,525 - GFF3441 0.73 +0.5 203,554 + GFF3441 0.76 -0.4 203,689 + -1.1 203,701 + +0.2 203,701 + -0.8 203,702 - +0.7 203,705 - -0.5 203,705 - -1.5 203,821 - -0.4 203,951 + GFF3442 0.22 -0.3 204,293 - GFF3442 0.64 -0.1 204,491 + GFF3442 0.88 -0.4 204,503 + GFF3442 0.90 -0.2 204,655 + -0.4
Or see this region's nucleotide sequence