Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3435 and GFF3436 are separated by 82 nucleotides GFF3436 and GFF3437 are separated by 148 nucleotides GFF3437 and GFF3438 are separated by 91 nucleotides GFF3438 and GFF3439 are separated by 145 nucleotides GFF3439 and GFF3440 are separated by 142 nucleotides
GFF3435 - FIG01046570: hypothetical protein, at 198,374 to 199,417
GFF3435
GFF3436 - Cytochrome C553 (soluble cytochrome f), at 199,500 to 200,030
GFF3436
GFF3437 - Putative outer membrane lipoprotein, at 200,179 to 200,493
GFF3437
GFF3438 - FIG01046842: hypothetical protein, at 200,585 to 200,743
GFF3438
GFF3439 - hypothetical protein, at 200,889 to 201,032
GFF3439
GFF3440 - Nickel ABC transporter, periplasmic nickel-binding protein nikA2 (TC 3.A.1.5.3), at 201,175 to 202,809
GFF3440
Position (kb) 200
201 Strain fitness (log2 ratio) -1
0
1 at 199.336 kb on + strand at 199.356 kb on + strand at 199.357 kb on - strand at 199.360 kb on + strand at 199.361 kb on - strand at 199.367 kb on + strand at 199.393 kb on - strand at 199.393 kb on - strand at 199.393 kb on - strand at 199.497 kb on + strand at 199.550 kb on - strand at 199.622 kb on + strand, within GFF3436 at 199.629 kb on + strand, within GFF3436 at 199.630 kb on - strand, within GFF3436 at 199.676 kb on + strand, within GFF3436 at 199.847 kb on - strand, within GFF3436 at 199.891 kb on + strand, within GFF3436 at 199.892 kb on - strand, within GFF3436 at 199.955 kb on + strand, within GFF3436 at 200.005 kb on - strand at 200.137 kb on - strand at 200.292 kb on + strand, within GFF3437 at 200.311 kb on + strand, within GFF3437 at 200.311 kb on + strand, within GFF3437 at 200.311 kb on + strand, within GFF3437 at 200.312 kb on - strand, within GFF3437 at 200.508 kb on - strand at 200.788 kb on - strand at 200.883 kb on + strand at 200.884 kb on - strand at 200.900 kb on + strand at 200.951 kb on + strand, within GFF3439 at 200.985 kb on + strand, within GFF3439 at 201.175 kb on + strand at 201.207 kb on - strand at 201.363 kb on + strand, within GFF3440 at 201.363 kb on + strand, within GFF3440 at 201.363 kb on + strand, within GFF3440 at 201.388 kb on + strand, within GFF3440
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 199,336 + +0.1 199,356 + +0.1 199,357 - -0.5 199,360 + -0.5 199,361 - -0.1 199,367 + -0.4 199,393 - +0.1 199,393 - -0.2 199,393 - +0.4 199,497 + +0.0 199,550 - -0.3 199,622 + GFF3436 0.23 +0.1 199,629 + GFF3436 0.24 -0.0 199,630 - GFF3436 0.24 -0.1 199,676 + GFF3436 0.33 -1.0 199,847 - GFF3436 0.65 -0.8 199,891 + GFF3436 0.74 -1.4 199,892 - GFF3436 0.74 -0.4 199,955 + GFF3436 0.86 -0.2 200,005 - -1.3 200,137 - -0.6 200,292 + GFF3437 0.36 -0.2 200,311 + GFF3437 0.42 +0.1 200,311 + GFF3437 0.42 -0.2 200,311 + GFF3437 0.42 +0.3 200,312 - GFF3437 0.42 -0.7 200,508 - -0.3 200,788 - -0.1 200,883 + -0.4 200,884 - +0.6 200,900 + +0.0 200,951 + GFF3439 0.43 +0.4 200,985 + GFF3439 0.67 -0.8 201,175 + +0.4 201,207 - -0.0 201,363 + GFF3440 0.11 +1.1 201,363 + GFF3440 0.11 -0.2 201,363 + GFF3440 0.11 -0.1 201,388 + GFF3440 0.13 -0.5
Or see this region's nucleotide sequence